PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185794.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 310aa MW: 34218.9 Da PI: 4.3951

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.5e-19	55	108	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k XP_019185794.1 55 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 108 456899***********************************************9 PP
2	HD-ZIP_I/II	130	9.4e-42	54	145	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk + e+L++++e+L +e+ XP_019185794.1 54 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKTNYDSLKLKFEALQHDNESLLKEIG 145 69*************************************************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MKRSLGSSDS LGALMSICPT TADEPGHVYS REFQTMLEGF EEEESGGGAM TMMEKKRRLS 60 VEQVKALEKN FEVENKLEPE RKVKLAQELG LQPRQVAVWF QNRRARWKTK QLERDYGVLK 120 TNYDSLKLKF EALQHDNESL LKEIGELKAK LDGENGESKV TVKEEAVESE SDEEAKQDET 180 AELNLEDFHG GGGLVTASLF ADFKDGSSDS DSSAILNEDN SPKAGAAANA AGGAIFMISN 240 AASFSSPPSI NCYQFSENPK TAAAAYQPQM VKIEEHNFFG GEDSCSSLFS DEQAPILHWY 300 SPEVDWNCTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	84	KKRRLSVEQVKALEKNFEVENKLEPERKVK
2	103	111	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	1e-62	HD-ZIP family protein