PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185679.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 475aa    MW: 53714.6 Da    PI: 6.2344
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.73.8e-137494701374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+lL++c+++v++g+ e+a+ +L+++s+la++dgd+mqR+aayf eALa r+++ + +lykal++++ +  + ++e  ++++f+ev+P+l++s+
  XP_019185679.1  49 LVHLLVTCVNHVAAGNIENANIVLEHISHLAASDGDSMQRVAAYFNEALADRILKGWAGLYKALNSTRVT--SAADENVVQRMFFEVCPFLRLSY 141
                     68**************************************************************998887..488888999************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++N+aI+ea+ege+ vHiiD+++ +++QW++Llqa++ Rpegpp+lRiTg+++    +ke le+++++L++ Ae+l++pf+fn+ v++rle+l+
  XP_019185679.1 142 VITNEAIMEAMEGEKVVHIIDLNAFEPAQWISLLQAMSVRPEGPPHLRITGINE----HKEVLEQMAHQLNEAAEKLDIPFQFNP-VVSRLESLS 231
                     ******************************************************....9**************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.......................................................desvsleserdevLkl 230
                     +e+L vk gEa+a+++v+qlhr+l                                                       +++++++ + +++L+ 
  XP_019185679.1 232 IESLPVKMGEAIAISSVFQLHRFLafedemlqrntppvvsrhsnslhlhrilqvnprtlgdflekevanpygaspdstsSSPLATAPKMTSFLNS 326
                     ***************************************************************************998877777777999***** PP

            GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                     ++slsPk++v++eqea+hn+ ++++r +eal++y+alfd+le+++pr+s er+k+E+++ g+ei+n+++ceg er+erhe+lekW  rle aGF+
  XP_019185679.1 327 LWSLSPKIMVITEQEANHNGLTLMDRTMEALNFYAALFDCLESTIPRASPERQKIEKMVYGEEIKNIISCEGLERKERHEKLEKWIPRLELAGFR 421
                     *********************************************************************************************** PP

            GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +v ls+++++q ++ll+ ++ dgy++++++g+++++W+d+pL+svSaWr
  XP_019185679.1 422 KVGLSYHIMMQGRRLLHSHNYDGYNLKDHDGCFLICWQDQPLFSVSAWR 470
                     ************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    
MVAMVQEEGS SSIGSSPLQY FSMMSLSPGI GSPYPWLGEM RSERRGLFLV HLLVTCVNHV  60
AAGNIENANI VLEHISHLAA SDGDSMQRVA AYFNEALADR ILKGWAGLYK ALNSTRVTSA  120
ADENVVQRMF FEVCPFLRLS YVITNEAIME AMEGEKVVHI IDLNAFEPAQ WISLLQAMSV  180
RPEGPPHLRI TGINEHKEVL EQMAHQLNEA AEKLDIPFQF NPVVSRLESL SIESLPVKMG  240
EAIAISSVFQ LHRFLAFEDE MLQRNTPPVV SRHSNSLHLH RILQVNPRTL GDFLEKEVAN  300
PYGASPDSTS SSPLATAPKM TSFLNSLWSL SPKIMVITEQ EANHNGLTLM DRTMEALNFY  360
AALFDCLEST IPRASPERQK IEKMVYGEEI KNIISCEGLE RKERHEKLEK WIPRLELAGF  420
RKVGLSYHIM MQGRRLLHSH NYDGYNLKDH DGCFLICWQD QPLFSVSAWR FQRYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein