PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185521.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 274aa    MW: 30701 Da    PI: 8.0667
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185521.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1171.1e-36101012102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d+++++++sw++ g++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+kell++
  XP_019185521.1  10 FLTKTFQLVDDPTTDDVVSWNDGGDTFVVWKTAEFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFKRGQKELLTE 95 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k+
  XP_019185521.1  96 IRRRKT 101
                     ***986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MSQRTVPAPF LTKTFQLVDD PTTDDVVSWN DGGDTFVVWK TAEFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANENFKRGQK ELLTEIRRRK TVASAPVTGK CNSSSPENSS  120
DEPSSSSTSS SNTKNPRSGK PQLEDLTDEN EKLKRDNEVL SSELAQTKKQ CDELVAFLTQ  180
YVKVAPDEIN RIMTQGTRSS HSGFDGSSAD LNSNDSQDSD NEHGESLKLF GVLLKEKKRK  240
RSFSGNIEFP SAHRKNAPWM KISSAPGDTS KVCN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237242KKRKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-79HSF family protein