PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185516.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 493aa MW: 55464.3 Da PI: 6.4373

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185516.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	65.6	7.3e-21	137	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k l++s+v++ ++ lp +f++++ + +++t+++e+e+g+++e+k+i +k++ l++GW++Fv a++L egD+++F+l+g ++f +v XP_019185516.1 137 FLKLLVRSHVGSCFWMGLPVPFCKKYLSR--KDTTVVVENENGEEFEIKYIAEKTG----LSAGWRKFVAAHKLVEGDVLIFQLTGPDRF--KVY 223 89**********************655..6779***********777777....**********************998888..888 PP EE-S CS B3 96 vfrk 99 v+r+ XP_019185516.1 224 VIRT 227 8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MKIKVVLNQE NRGDPDMPKK EIVEDERAEP EEEDATRDPN EENLSLVNIP NSSPSPLNSY 60 PQHLGKRKRK PKEMIDEISP LVLSRKRKKK LQPSAAQSSH EGPGGKGKSP SPLQVKSPTL 120 IRAEEVQSSL GQEYPTFLKL LVRSHVGSCF WMGLPVPFCK KYLSRKDTTV VVENENGEEF 180 EIKYIAEKTG LSAGWRKFVA AHKLVEGDVL IFQLTGPDRF KVYVIRTNDL TDVDGALSLL 240 NLEVLTKQSD AAEATNPNNK RKKRQKSLPL TVVQRKKHKA QLVQLEEQSG NDSDEVASEV 300 FEGSKALTLA ASFGDVKSFE DFTIVVNGVC LDSEIPDHIR RKYYELCCSK NAFLHDRLLS 360 GLYGQLIAGM IFEVVSIADA IRACKLTTAR TEFEVWDKSL KSFELLGMNV GFLRDRVRQL 420 LNLAFESEGA SDAKRYWEAK TGLARSEEEI KTIEIKLVEL KEASKVYSAD IEALRSKAES 480 FEIMFDEEIN APW

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MKIKVVLNQE NRGDPDMPKK EIVEDERAEP EEEDATRDPN EENLSLVNIP NSSPSPLNSY  60
PQHLGKRKRK PKEMIDEISP LVLSRKRKKK LQPSAAQSSH EGPGGKGKSP SPLQVKSPTL  120
IRAEEVQSSL GQEYPTFLKL LVRSHVGSCF WMGLPVPFCK KYLSRKDTTV VVENENGEEF  180
EIKYIAEKTG LSAGWRKFVA AHKLVEGDVL IFQLTGPDRF KVYVIRTNDL TDVDGALSLL  240
NLEVLTKQSD AAEATNPNNK RKKRQKSLPL TVVQRKKHKA QLVQLEEQSG NDSDEVASEV  300
FEGSKALTLA ASFGDVKSFE DFTIVVNGVC LDSEIPDHIR RKYYELCCSK NAFLHDRLLS  360
GLYGQLIAGM IFEVVSIADA IRACKLTTAR TEFEVWDKSL KSFELLGMNV GFLRDRVRQL  420
LNLAFESEGA SDAKRYWEAK TGLARSEEEI KTIEIKLVEL KEASKVYSAD IEALRSKAES  480
FEIMFDEEIN APW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	88	KRKRKPKEMIDEISPLVLSRKRK
2	66	90	KRKRKPKEMIDEISPLVLSRKRKKK
3	67	89	KRKRKPKEMIDEISPLVLSRKRK
4	68	90	KRKPKEMIDEISPLVLSRKRKKK
5	68	90	KRKRKPKEMIDEISPLVLSRKRK
6	85	89	RKRKK
7	260	277	KRKKRQKSLPLTVVQRKK
8	260	284	KRKRKPKEMIDEISPLVLSRKRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-32	B3 family protein