PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019185512.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 23156.8 Da PI: 6.2312 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.2 | 1.2e-37 | 10 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC++dC+la+yfpa+qpk+f+n+h+lFG+sn+lk+lk++++++ + dam+s+++eA++r r Pv+G+v+ i l+++l+q++ el XP_019185512.1 10 ACAACKHQRRKCSSDCALAQYFPATQPKTFQNAHRLFGVSNILKTLKNIDDDDkKADAMKSIIFEANMRHRFPVHGCVEYICYLRHRLSQAEDEL 104 7************************************************7666499*************************************** PP DUF260 95 allkee 100 ++ + XP_019185512.1 105 RCVRGQ 110 998876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence |
MTVKGGNSQA CAACKHQRRK CSSDCALAQY FPATQPKTFQ NAHRLFGVSN ILKTLKNIDD 60 DDKKADAMKS IIFEANMRHR FPVHGCVEYI CYLRHRLSQA EDELRCVRGQ LERCREQLLK 120 SMDSNDDNCS DGGYGWTDVL SSDRTNLSSL DPISCAEYND LSSALIFPHE NFPDYYGLIP 180 GDEPATKEAS NSSSVSSSQT DLRNAAAGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47870.1 | 4e-36 | LBD family protein |