PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185182.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YC

Protein Properties

Length: 283aa MW: 31149.6 Da PI: 5.6621

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185182.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.7	2.7e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t+ ++ +v++ ++fdfl ++v + XP_019185182.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVSALHLKHCVQSYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MKKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLRRGAK 60 TVSALHLKHC VQSYNVFDFL REVVSKVPDY GHSDTGAEVS RRRKVAMDEL NDSDDESKRS 120 RTETCPPSRG RGRGRGRGRG RAARADREPQ PAHHHDVESD SCASIQHSCT QNPNPNPNPG 180 MMKETCLESK EPPRQDPNAT DGGDKSAIKN INPNISSDES AEKPNITCAA TAAACSSLST 240 PPDVKDSEGT VLSEIDRMAV DPLHFAQFNS TIVEEEEDYD DEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	138	RGRGRGRGRG
2	129	139	RGRGRGRGRGR
3	131	140	RGRGRGRGRG
4	131	141	RGRGRGRGRGR
5	133	142	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-66	NF-YC family protein