PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185064.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 536aa MW: 61241.2 Da PI: 7.0313

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.2	2.1e-21	64	148	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnH+l+ XP_019185064.1 64 LYNNYAYRLGFSVRKGHQRYKGSTNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHKLC 148 7******************99999***********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MEDGTEQTNS AVGDGHSIQV SEGIVDGSVS SDQADVDVDG SSSIPVDQDL VGLVVSNVDE 60 AFELYNNYAY RLGFSVRKGH QRYKGSTNTI QMKKFCCSKA GYKANSGVKA YSKIDTRTGC 120 GAFVQFDVGD DGLWTVTKHE KVHNHKLCLF NKSHLLRSHK SVGDNQLLYL QGLKDSGVAL 180 VDGIRFLKHQ SGGSPLVGFT NRDAYNSMAA DTVKRLDGTD SNSLIEIFRR RQSTETDFFF 240 DFELDLDARL CSFFWRDGQM RRDYELFGDL VVHDTTYRTN KYDMICGPFV GMNHHCMNVM 300 FGCGFLMNER IESFVWLFKA FLRSMGCKCP QTIMTDQCAA MAAAISTVFP TSRHRLCIWH 360 IGENSKKHIK MLRNNKDFLD MFNYVLKYTE TEAEFQFYWT RLVTDYKCHK NTWLEKLYDS 420 REKWCTAFNK DYFSGGILSS QRSETTNHSI SRRLSKTAGL CDFYSSFVSV ISEWRSKENG 480 ENFRCAQGVP AMMMEHVKLL SHAREVYTIE IYFLFEEQFM KGSACHQEMV LNDGHQ

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MEDGTEQTNS AVGDGHSIQV SEGIVDGSVS SDQADVDVDG SSSIPVDQDL VGLVVSNVDE  60
AFELYNNYAY RLGFSVRKGH QRYKGSTNTI QMKKFCCSKA GYKANSGVKA YSKIDTRTGC  120
GAFVQFDVGD DGLWTVTKHE KVHNHKLCLF NKSHLLRSHK SVGDNQLLYL QGLKDSGVAL  180
VDGIRFLKHQ SGGSPLVGFT NRDAYNSMAA DTVKRLDGTD SNSLIEIFRR RQSTETDFFF  240
DFELDLDARL CSFFWRDGQM RRDYELFGDL VVHDTTYRTN KYDMICGPFV GMNHHCMNVM  300
FGCGFLMNER IESFVWLFKA FLRSMGCKCP QTIMTDQCAA MAAAISTVFP TSRHRLCIWH  360
IGENSKKHIK MLRNNKDFLD MFNYVLKYTE TEAEFQFYWT RLVTDYKCHK NTWLEKLYDS  420
REKWCTAFNK DYFSGGILSS QRSETTNHSI SRRLSKTAGL CDFYSSFVSV ISEWRSKENG  480
ENFRCAQGVP AMMMEHVKLL SHAREVYTIE IYFLFEEQFM KGSACHQEMV LNDGHQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-67	FAR1 family protein