PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019184932.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 378aa    MW: 42163.5 Da    PI: 8.4851
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019184932.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.8e-08152172526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G+Ck Gd C +aHg
  XP_019184932.1 152 ACPEFRK-GQCKNGDACEYAHG 172
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MVRGVENKKR LITVRSCEKM MMMIRQSTHP HQTVQVPPWD FLDDPTADIH SSFPWGGSNG  60
GNASAVSPDS GFDALTALQR YLPSNVNDVV PDSDELDVPV DAFSSDQFRM YEFKVRKCAR  120
GRSHDWTECP FAHPGEKARR RDPRKFHYSG TACPEFRKGQ CKNGDACEYA HGVFECWLHP  180
ARYRTQPCKD GTQCRRRVCF FAHTPDQLRV LPQASPRSHH AAAEPYDSYD GSPSRRAGFD  240
SLFNKAAFGS YSPPLSPQSE SPPMSPSASM SLNSVSGLVE SMRNMHIGKG RMGMGMSMSM  300
SPPSWGLQLG SPRSPSTLRP AFMSLPTTPT QAPTRSGPGV FDLWETSCEE EPVMERVESG  360
RDLRARMYAR LSKENSLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-110C3H family protein