PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019184756.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 775aa MW: 87545.8 Da PI: 7.7524

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019184756.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.4	4.2e-17	116	212	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY++YA vGF+ rk + +++ r+g +++r+ Cs+eg++++ ++ +r+r+++r+gCka+++ k++++g ++v+ le+ H+H XP_019184756.1 116 FYKQYAGYVGFDCRKGTIRRR-RDGVVVERQVFCSREGFKQSIYSTqstcvgdgkPIVVKRRRVTNRVGCKARVVFKRKSNGLFVVHFLEERHTH 209 9*************99886.9999***********98888889999887556678999***************************** PP FAR1 88 ela 90 ++ XP_019184756.1 210 VMC 212 998 PP

Sequence ? help Back to Top
Protein Sequence Length: 775 aa Download sequence
MDPVGFVYDK DTSIDAGVEG SGGVCNTEHS TDGGHIDGCV EGSGSQCDEG NSTDVAVETS 60 GQGASEHCLT DVEAEDNACV LETSPGLTKY WRPVCTDSLK PMVGQTFDSL DCAIVFYKQY 120 AGYVGFDCRK GTIRRRRDGV VVERQVFCSR EGFKQSIYST QSTCVGDGKP IVVKRRRVTN 180 RVGCKARVVF KRKSNGLFVV HFLEERHTHV MCSIIAKQFL KVNRSLDTGH QMFIASCVRA 240 NIGYVRSYKL FKEIFGEYSN VGATGVDFKN FKRDLMAYIL NGDAQLFIDT LFKRRELCEA 300 FEFEYDVDDV DQLTRVFWAD AVSRKNFALF GDVVLFDATY RSNRYNLVFV PFTGIDNHKR 360 SITFGAGLLT REDVDSYVWL LERFKKTMRH EPICVVTDQD PAVKIAVARV FGTSKHRFCM 420 WHIMCKVGEK VGPVLAKDEV FRRKLNGIVW NKSIDSKTFE DLWSRIIEEY GLGDNGWFRY 480 LFESHTFWAS PYFHDEFMSG FVRTTSRSES QNSFFGSFSN GHSSLVEFLV HFDSAISAQR 540 HAQAKLTADS ESCFPVLKTP LALEKHAMDV YTISVFYDVQ VEICEGCFSC RVVSLCECEG 600 KVCYGIKDGD KKAWSVEFLL ADCSAICSCK MFERMGLVCR HIFFVFKDHG LERIPSMYLV 660 SRWTKGASLK PIFDIDDTVV DQSAKVDNVR VLTNLMWSEI YASVGLADGN VERLEKLRRG 720 STVEVRDPIK AKNKGGGKRM KSAREKAVNK CVKQSRKCHT CDEYGHNSRT CPLNG

Sequence ? help Back to Top

Protein Sequence Length: 775 aa Download sequence

MDPVGFVYDK DTSIDAGVEG SGGVCNTEHS TDGGHIDGCV EGSGSQCDEG NSTDVAVETS  60
GQGASEHCLT DVEAEDNACV LETSPGLTKY WRPVCTDSLK PMVGQTFDSL DCAIVFYKQY  120
AGYVGFDCRK GTIRRRRDGV VVERQVFCSR EGFKQSIYST QSTCVGDGKP IVVKRRRVTN  180
RVGCKARVVF KRKSNGLFVV HFLEERHTHV MCSIIAKQFL KVNRSLDTGH QMFIASCVRA  240
NIGYVRSYKL FKEIFGEYSN VGATGVDFKN FKRDLMAYIL NGDAQLFIDT LFKRRELCEA  300
FEFEYDVDDV DQLTRVFWAD AVSRKNFALF GDVVLFDATY RSNRYNLVFV PFTGIDNHKR  360
SITFGAGLLT REDVDSYVWL LERFKKTMRH EPICVVTDQD PAVKIAVARV FGTSKHRFCM  420
WHIMCKVGEK VGPVLAKDEV FRRKLNGIVW NKSIDSKTFE DLWSRIIEEY GLGDNGWFRY  480
LFESHTFWAS PYFHDEFMSG FVRTTSRSES QNSFFGSFSN GHSSLVEFLV HFDSAISAQR  540
HAQAKLTADS ESCFPVLKTP LALEKHAMDV YTISVFYDVQ VEICEGCFSC RVVSLCECEG  600
KVCYGIKDGD KKAWSVEFLL ADCSAICSCK MFERMGLVCR HIFFVFKDHG LERIPSMYLV  660
SRWTKGASLK PIFDIDDTVV DQSAKVDNVR VLTNLMWSEI YASVGLADGN VERLEKLRRG  720
STVEVRDPIK AKNKGGGKRM KSAREKAVNK CVKQSRKCHT CDEYGHNSRT CPLNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	178	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-87	FAR1 family protein