PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019184632.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 589aa MW: 67098.2 Da PI: 7.1183

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019184632.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.8	4e-09	47	90	2	46
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46 +Y++YA+ +GF+vrks+ k+ r g i k+++vC++eg++++ + XP_019184632.1 47 YYKTYASVIGFDVRKSSDIKN-RYGIILKKKLVCNREGRDSKGRY 90 8**************9998.7888**********9987654 PP

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence
MEEGGKSQHC VMDESQDGTS IWFMECDPSI KPVVDQVFDT LEDGNAYYKT YASVIGFDVR 60 KSSDIKNRYG IILKKKLVCN REGRDSKGRY VVMKFEEGHT HCLCEESYKP FLKGNRKLDI 120 GHQQFIANCS KVNIRASKSH DLYAEMVGGV GNVGATQQDF KNYRMEILAY MQGGDAQMLI 180 SKYLDLKSDY DDMYFEYEAN ENDQLARVFW ADGMARKQYS VFGDVVSFDA RYKTNRYSLV 240 FVPFTGIDHH KKCVTFVAAL IAREDVDSYR WILKNFRNAM GSTPPLTITD QDPAMKVAIA 300 QEFPETRHRY CMWHIMAKVN DKVSPELAKN EAFRRELNDV VWNDSLTTAK FEVAWKAIIE 360 MFGLIENPWL NRMYDERASW IPASFEGVFM GGLLRTTSRS EAENRIFRSN TSKHICTEIC 420 AGCFDCRVRG VTPGEAGNTY EVEDEHDVRY TVFVEHGTRT TTCECRMYIQ IGLLCSHAFA 480 RGNPKARGTK EESDVLNTVY RCIAMAQGDS TKLKQIRNTL TEIETTWCID GEDDVAVEKG 540 KRSIKETFCG APTPDTITVH PPAVSSTKGS GKRMRTAKEI AMKEQNKKK

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence

MEEGGKSQHC VMDESQDGTS IWFMECDPSI KPVVDQVFDT LEDGNAYYKT YASVIGFDVR  60
KSSDIKNRYG IILKKKLVCN REGRDSKGRY VVMKFEEGHT HCLCEESYKP FLKGNRKLDI  120
GHQQFIANCS KVNIRASKSH DLYAEMVGGV GNVGATQQDF KNYRMEILAY MQGGDAQMLI  180
SKYLDLKSDY DDMYFEYEAN ENDQLARVFW ADGMARKQYS VFGDVVSFDA RYKTNRYSLV  240
FVPFTGIDHH KKCVTFVAAL IAREDVDSYR WILKNFRNAM GSTPPLTITD QDPAMKVAIA  300
QEFPETRHRY CMWHIMAKVN DKVSPELAKN EAFRRELNDV VWNDSLTTAK FEVAWKAIIE  360
MFGLIENPWL NRMYDERASW IPASFEGVFM GGLLRTTSRS EAENRIFRSN TSKHICTEIC  420
AGCFDCRVRG VTPGEAGNTY EVEDEHDVRY TVFVEHGTRT TTCECRMYIQ IGLLCSHAFA  480
RGNPKARGTK EESDVLNTVY RCIAMAQGDS TKLKQIRNTL TEIETTWCID GEDDVAVEKG  540
KRSIKETFCG APTPDTITVH PPAVSSTKGS GKRMRTAKEI AMKEQNKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-53	FAR1 family protein