PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019184602.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 600aa MW: 68934.4 Da PI: 8.1741

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019184602.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.5	2.1e-18	48	134	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Yn+YA +vGFs r+ k+++++ +++++++ f Cs+ g+++ + k ++ rtgC a ++ ++++g w v+k e+ HnHel+p XP_019184602.1 48 DMYNDYAFRVGFSARRGKQRYTSATKTMKTKMFHCSNDGFKRITGKW----CYSKIDGRTGCGAFIQFDLHENGMWIVSKHEKLHNHELVP 134 58***************************************9887....889999******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MDESIAQQHV AETEQLTDPV GVADRENVNL ADQDLVGMSV FSVDEAYDMY NDYAFRVGFS 60 ARRGKQRYTS ATKTMKTKMF HCSNDGFKRI TGKWCYSKID GRTGCGAFIQ FDLHENGMWI 120 VSKHEKLHNH ELVPPSKSYL LRSHRMVSRN HISYLTDLKS SGVSVADGVR FLKTQSGGSP 180 LVGFTSRDAY NSLCTDALNK LDGTDSNTLI EIFKRRQSSE RDFYFDFETF LRSMDYKSPQ 240 SIMTDQCAVM AAAIVQVFPS SRHRLCIWHI GENSKKHIKG LRNQKDFLDI FNCLLEYMHT 300 EAEFEFYWTR MVTTYKCHNN HWIEKLYGCR EKCCPAFNKD YFSGGILSSQ RKWRSRENGE 360 DVRCSQGVPI MVMDNVKILL HVREIYTIEI YYLFEEQFLK GGSCYQECVM LEDGVYKYHV 420 WRPNVDIIRH EVIFNNRQMD IGFPEKYILK RWTKKVVEVD NFDIMSRVDS GNFRGLAVYN 480 QENIEGRKIC EEAIADAKRR LEAECGGNLF GECDIGSSSG VIKDPSTRRM KGLRNTKMSS 540 VISKKYNKAR GQKHLAHMVA SKIKSAVQSQ VEDDILNIAG DGYLVHPSFG GSNFCHVSTM

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MDESIAQQHV AETEQLTDPV GVADRENVNL ADQDLVGMSV FSVDEAYDMY NDYAFRVGFS  60
ARRGKQRYTS ATKTMKTKMF HCSNDGFKRI TGKWCYSKID GRTGCGAFIQ FDLHENGMWI  120
VSKHEKLHNH ELVPPSKSYL LRSHRMVSRN HISYLTDLKS SGVSVADGVR FLKTQSGGSP  180
LVGFTSRDAY NSLCTDALNK LDGTDSNTLI EIFKRRQSSE RDFYFDFETF LRSMDYKSPQ  240
SIMTDQCAVM AAAIVQVFPS SRHRLCIWHI GENSKKHIKG LRNQKDFLDI FNCLLEYMHT  300
EAEFEFYWTR MVTTYKCHNN HWIEKLYGCR EKCCPAFNKD YFSGGILSSQ RKWRSRENGE  360
DVRCSQGVPI MVMDNVKILL HVREIYTIEI YYLFEEQFLK GGSCYQECVM LEDGVYKYHV  420
WRPNVDIIRH EVIFNNRQMD IGFPEKYILK RWTKKVVEVD NFDIMSRVDS GNFRGLAVYN  480
QENIEGRKIC EEAIADAKRR LEAECGGNLF GECDIGSSSG VIKDPSTRRM KGLRNTKMSS  540
VISKKYNKAR GQKHLAHMVA SKIKSAVQSQ VEDDILNIAG DGYLVHPSFG GSNFCHVSTM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	1e-22	FAR1 family protein