PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019184590.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 284aa    MW: 31334.6 Da    PI: 5.894
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019184590.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.7e-153481148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed+ll d++++ G g  W++Ia ++  gRt++++k++w+++l
   XP_019184590.1 34 RGPWTPAEDKLLTDYINKEGEGqWWSLIAGRIS-GRTDNEIKNYWNTHL 81
                     89********************999********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MRTQSSEKVA AGASPPAKAK GKRTPCCSKV GLKRGPWTPA EDKLLTDYIN KEGEGQWWSL  60
IAGRISGRTD NEIKNYWNTH LTKKLISQGI DPRNHKPLLV NPTNSNHPKN HNPSSSSVPI  120
IKPTPIHVGL SNQDKTVKIN SSTTVNVVGG TTNHQIDQPN SVGGTTNHQT TGNGDEEFNM  180
DIGDDNEDNV GMDFCPDEDA FSTIFDSLMN EDVFFAAAQN NQQSNHHDIT PLPSTSENNN  240
NNQPLNPFQH MNFPFSTEDG LMMMMIFYHD LDPHLPPCFQ SASI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-29MYB family protein