PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019184505.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 505aa MW: 58303.9 Da PI: 9.0395

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019184505.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.7	2.5e-20	116	210	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA ++GF+vr+s+ kk+ + g + k++ vCs++g++e++ k+ ++++r+++++r+gC a++++k dg+++v+k+e+ H+H l XP_019184505.1 116 QFYTKYAATTGFDVRRSSDKKN-NFGIVLKKDVVCSRQGFKETRGKEtlveggCSEKKRRQTTNRVGCGARIVMKIVCDGRYKVHKFEERHTHCL 209 6**************99988.8888***************9998888999999****************************99 PP FAR1 90 a 90 + XP_019184505.1 210 C 210 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MTIVVFNKVV LKKLFLIGFA LLALFGWSVY ICYLEISSRT HLQSIYGFKH VQVACWVNET 60 YVIGVCSADA PDANESEKDC RMDISPGGTK YWYTKCDRSL RPYEGQMFNT LEDGIQFYTK 120 YAATTGFDVR RSSDKKNNFG IVLKKDVVCS RQGFKETRGK ETLVEGGCSE KKRRQTTNRV 180 GCGARIVMKI VCDGRYKVHK FEERHTHCLC EESHKPFMKV NRKLEIAHQE FITKCEKANV 240 GASKSFDIYA EMVGGPENVG ATQQDFKNYR RELLAYMKWG DVQMIISNYL EQKTYCADMY 300 FEYEVNANDQ LARVFWADGM TRKNYGAFGD VVFFDATYKT NRYHLVFVPF TGVDNHKRCV 360 TFAAALIDKE DVESYSWALK HFKNAMGTAP PLLITDQDPA MKIAIADMFG GSRHRYCMWH 420 IMTKVSKKVG ADMSKNNEFR RALNSVVWNK KSTRTEFEIG WKTVIGKYNL HENQWLTRMY 480 EERASWVPAF FDDVFMGGLL RTTSR

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MTIVVFNKVV LKKLFLIGFA LLALFGWSVY ICYLEISSRT HLQSIYGFKH VQVACWVNET  60
YVIGVCSADA PDANESEKDC RMDISPGGTK YWYTKCDRSL RPYEGQMFNT LEDGIQFYTK  120
YAATTGFDVR RSSDKKNNFG IVLKKDVVCS RQGFKETRGK ETLVEGGCSE KKRRQTTNRV  180
GCGARIVMKI VCDGRYKVHK FEERHTHCLC EESHKPFMKV NRKLEIAHQE FITKCEKANV  240
GASKSFDIYA EMVGGPENVG ATQQDFKNYR RELLAYMKWG DVQMIISNYL EQKTYCADMY  300
FEYEVNANDQ LARVFWADGM TRKNYGAFGD VVFFDATYKT NRYHLVFVPF TGVDNHKRCV  360
TFAAALIDKE DVESYSWALK HFKNAMGTAP PLLITDQDPA MKIAIADMFG GSRHRYCMWH  420
IMTKVSKKVG ADMSKNNEFR RALNSVVWNK KSTRTEFEIG WKTVIGKYNL HENQWLTRMY  480
EERASWVPAF FDDVFMGGLL RTTSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-63	FAR1 family protein