PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019184160.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 353aa MW: 39954.9 Da PI: 9.1413

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019184160.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52	2.3e-16	60	159	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 fY +YA+ v F+vr s+ +k +g+i++r C++eg+++ ++ ++ ++r+r ++r+gC a+ + dg+++++++e+ XP_019184160.1 60 FYTKYASIVRFDVRLSHLSKC-ADGTIVWRYVLCNREGHKHAVCRDkssvaeldgdveSSVKKRRRFSNRVGCGACAIFRYGGDGTYVIHRFEER 153 9**************9998.8888*********9987766779***998889999************************** PP FAR1 85 HnHela 90 HnH+l+ XP_019184160.1 154 HNHSLT 159 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MGYVLAILVF ALKFEFACEV DSYRLDTSPG LTKYYVPLCE DSVKPSVGKV FPDLDTGVAF 60 YTKYASIVRF DVRLSHLSKC ADGTIVWRYV LCNREGHKHA VCRDKSSVAE LDGDVESSVK 120 KRRRFSNRVG CGACAIFRYG GDGTYVIHRF EERHNHSLTS VMSRQFRKMN RKVGPGHMRF 180 VADCGIVNIG PVQSFRLFGE MFGGLANVGA TSLEFQNIKR DVDAFSAGVD AQMITNRYDM 240 VFTPFTGVNN HKKSITFGAG LLKKEDIESY VWLFEKFKEA MGSEPVLVVT DQDPAMRVAF 300 PRVFKEAKHR FFMWHIMSKV GDKVGPSLSK NETFRSKLNS VVWSHYLEPA EFD

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MGYVLAILVF ALKFEFACEV DSYRLDTSPG LTKYYVPLCE DSVKPSVGKV FPDLDTGVAF  60
YTKYASIVRF DVRLSHLSKC ADGTIVWRYV LCNREGHKHA VCRDKSSVAE LDGDVESSVK  120
KRRRFSNRVG CGACAIFRYG GDGTYVIHRF EERHNHSLTS VMSRQFRKMN RKVGPGHMRF  180
VADCGIVNIG PVQSFRLFGE MFGGLANVGA TSLEFQNIKR DVDAFSAGVD AQMITNRYDM  240
VFTPFTGVNN HKKSITFGAG LLKKEDIESY VWLFEKFKEA MGSEPVLVVT DQDPAMRVAF  300
PRVFKEAKHR FFMWHIMSKV GDKVGPSLSK NETFRSKLNS VVWSHYLEPA EFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-24	FAR1 family protein