PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019183716.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 404aa MW: 45610.8 Da PI: 6.5144

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019183716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.8	9.6e-26	94	175	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+laLi +rre++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k+++ ++ s +++y++++e XP_019183716.1 94 WVQEETLALISLRREIDCLFNTSKSNKHLWDRISMKMREKGFDRSPTMCTDKWRNLLKEFKKAKQNQDRN---GSAKMSYYKEIE 175 ***************************************************************99984...566899*998 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MYMSEKPQPI DFYKAEASAS AAADHHHHHH HHQSREIIME VAAANAPLPP HHRQPLLLPG 60 GGNGGDANSS GGEDNTAINP SPDLRAPKKR AETWVQEETL ALISLRREID CLFNTSKSNK 120 HLWDRISMKM REKGFDRSPT MCTDKWRNLL KEFKKAKQNQ DRNGSAKMSY YKEIEDILNE 180 RNKNGSGGHK SPSAPKVDSF MHFSEKGLDD TNITFGPVED SGRPTLNLER RLDHDGHPLA 240 ITAADAVTAS GVSPWNWRGT PGNGDQGNVF EGRVISVRWG DYTKRFGIDG SPEAIKEAIK 300 STFGLRTKRA FWLEDEDNVV RALDRDMPLG NYTLHVDEGL TVKICLYEEA EDVAFPPSEE 360 KTFYSEDDFR DFLSRRGWTC LRDNYRNIDS MDELCPGAIY RGVR

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MYMSEKPQPI DFYKAEASAS AAADHHHHHH HHQSREIIME VAAANAPLPP HHRQPLLLPG  60
GGNGGDANSS GGEDNTAINP SPDLRAPKKR AETWVQEETL ALISLRREID CLFNTSKSNK  120
HLWDRISMKM REKGFDRSPT MCTDKWRNLL KEFKKAKQNQ DRNGSAKMSY YKEIEDILNE  180
RNKNGSGGHK SPSAPKVDSF MHFSEKGLDD TNITFGPVED SGRPTLNLER RLDHDGHPLA  240
ITAADAVTAS GVSPWNWRGT PGNGDQGNVF EGRVISVRWG DYTKRFGIDG SPEAIKEAIK  300
STFGLRTKRA FWLEDEDNVV RALDRDMPLG NYTLHVDEGL TVKICLYEEA EDVAFPPSEE  360
KTFYSEDDFR DFLSRRGWTC LRDNYRNIDS MDELCPGAIY RGVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-163	Trihelix family protein