PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019183510.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 273aa    MW: 30554.7 Da    PI: 4.9446
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019183510.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.6e-2164117356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le+ Fe+++++  e++ +LA+klgL+ rqV vWFqNrRa++k
  XP_019183510.1  64 KKRRLTPEQVHLLEKSFEEENKLEPERKSQLAHKLGLQPRQVAVWFQNRRARWK 117
                     5678*************************************************9 PP
2HD-ZIP_I/II132.91.2e-4263155193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl+ eqv+lLE+sFeee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++y++l ++ +++ ke+e+L++el++
  XP_019183510.1  63 EKKRRLTPEQVHLLEKSFEEENKLEPERKSQLAHKLGLQPRQVAVWFQNRRARWKTKQLERDYDQLKSSYESLLSDYDSILKEKEKLKAELAS 155
                     69**************************************************************************************99975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MESGRIFFDP ACHGNMLFLG NADPIFRGGR SVVKLEETSK RRPFFTSPEE LFDEEYYDEQ  60
SPEKKRRLTP EQVHLLEKSF EEENKLEPER KSQLAHKLGL QPRQVAVWFQ NRRARWKTKQ  120
LERDYDQLKS SYESLLSDYD SILKEKEKLK AELASLNEKL EAKEVVSHKA AAADPVVPGN  180
ATAAGVGANV KVEDRLSSGS AGSAVVDQDS PHQLVDSGDS YFHNQDHHNY HECGGGGGGL  240
QAALQSEEDD GSDDGQNNYF SAMFVAAEQP RPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-71HD-ZIP family protein