PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019183311.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 482aa MW: 52142.5 Da PI: 6.6751

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019183311.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.3	1.7e-29	278	336	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt++ +Cpv+k+++r+aed +v+++tYegeHnh+ XP_019183311.1 278 SDGCQWRKYGQKMSKGNPCPRAYYRCTMTsTCPVRKQIQRCAEDRSVMIVTYEGEHNHP 336 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MDGSPSHHHH LHHPTVILNS LDDPTLPPPP PPAASSFRPE KRVVNELDFF KRENTDFDSA 60 MANEAALVSK GNGRVGDEAV NHPPVLDTGL DLLGSSKKSM VFHGASPATM EHKATVEEER 120 SLYLTALREE LERMNSENQR LKSMLNQVHD KYNALKMHYA YILEHQQTLK PEIPEDDKMN 180 DGFAEGNEKK RKLKDDMKEE HSHSHSSPEG GAGAGASPPC PEDNTREESP DKVQQKLAGR 240 SNGENYSDHL PAAADQPAPA AKKARVSVRI PCDTPYCSDG CQWRKYGQKM SKGNPCPRAY 300 YRCTMTSTCP VRKQIQRCAE DRSVMIVTYE GEHNHPLPPA ARPMASTTSA AATMLLSGAA 360 RSADGPGRPV NLDVLPPNFL PTISTFASVP TITLDLTNPM ATQQTPPPFH SPNPPLPPGI 420 VSAAAAALTR NPSFTAALVS AITSIIGGSH AAAQPPPNST DLSDQDVKPS PSMESNVQAK 480 VL

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MDGSPSHHHH LHHPTVILNS LDDPTLPPPP PPAASSFRPE KRVVNELDFF KRENTDFDSA  60
MANEAALVSK GNGRVGDEAV NHPPVLDTGL DLLGSSKKSM VFHGASPATM EHKATVEEER  120
SLYLTALREE LERMNSENQR LKSMLNQVHD KYNALKMHYA YILEHQQTLK PEIPEDDKMN  180
DGFAEGNEKK RKLKDDMKEE HSHSHSSPEG GAGAGASPPC PEDNTREESP DKVQQKLAGR  240
SNGENYSDHL PAAADQPAPA AKKARVSVRI PCDTPYCSDG CQWRKYGQKM SKGNPCPRAY  300
YRCTMTSTCP VRKQIQRCAE DRSVMIVTYE GEHNHPLPPA ARPMASTTSA AATMLLSGAA  360
RSADGPGRPV NLDVLPPNFL PTISTFASVP TITLDLTNPM ATQQTPPPFH SPNPPLPPGI  420
VSAAAAALTR NPSFTAALVS AITSIIGGSH AAAQPPPNST DLSDQDVKPS PSMESNVQAK  480
VL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	4e-54	WRKY family protein