PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019183211.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 183aa    MW: 20041.4 Da    PI: 6.655
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019183211.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601376.8e-4318116199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC +dC++apyfpae+p++fanvh++FG+snv kll+a+p+++r+da++sl+yeAear++dPv+G+v+ i+ lq+q+ +l++el+
  XP_019183211.1  18 PCAACKLLRRKCLPDCIFAPYFPAEEPQQFANVHRIFGTSNVGKLLNAIPPHQRQDAVNSLAYEAEARTKDPVHGCVAAISVLQRQVIRLQKELD 112
                     7********************************************************************************************99 PP

          DUF260  96 llke 99 
                      +++
  XP_019183211.1 113 DTNA 116
                     8765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MSSSSYSSSS SSSYSNPPCA ACKLLRRKCL PDCIFAPYFP AEEPQQFANV HRIFGTSNVG  60
KLLNAIPPHQ RQDAVNSLAY EAEARTKDPV HGCVAAISVL QRQVIRLQKE LDDTNADLMR  120
FTAKPHSHQG YPPGMEFVST MNQTAAAYGD NQQRVSVNEY GLPLPAAADR SPSFYPEVVD  180
ADC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.15e-61LBD family protein