PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182978.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 516aa MW: 55649.3 Da PI: 6.8037

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.6	1.7e-14	241	300	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse..ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+ g ++ ++++lg ++ +++Aa+a++ a++k++g XP_019182978.1 241 SIYRGVTRHRWTGRYEAHLWDNSSrrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 300 57*****************777554488446******99***********98 PP
2	AP2	49.8	8.5e-16	343	394	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_019182978.1 343 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDVAAIKFRG 394 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MAPANNWLSF SLSSMGMLSS SSSSSSSQLH HEPTAVKINA PFAASDSPHY YFADHIYGGG 60 NADWTNGKGQ MAGGLSLNGG GDSSVFHGFM EEAQIHHQPP PPQQQKQLED FLGGDSAAAL 120 VRYSDSQTET QDSSLTHIST SAAAAYFNSR QDLQSIPGIQ AFSTNSGSDV DDSASVPRTQ 180 AIATAEFTGH SIDSVNALPY SQRPTGALSL AVNPQTAETA IVPVDSDTSK KIPDTFGQRT 240 SIYRGVTRHR WTGRYEAHLW DNSSRREGQA RKGRQVYLGG YDKEDKAARA YDLAALKYWG 300 ATATTNFPIS NYTNELEDMK NMTKQEFIAS LRRKSSGFSR GASIYRGVTR HHQQGRWQAR 360 IGRVAGNKDL YLGTFATEEE AAEAYDVAAI KFRGMSAVTN FEMSRYDVDT ILKSALPIGG 420 AAKRLKLSLE PEQHSPALSG GSNSSSSINF GAIPPVSAIP CGVSFDSSAA ALYHHHPTLF 480 HHLHSGGNAD LSADIPAALP FQASPAEFFI WPHPSY

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MAPANNWLSF SLSSMGMLSS SSSSSSSQLH HEPTAVKINA PFAASDSPHY YFADHIYGGG  60
NADWTNGKGQ MAGGLSLNGG GDSSVFHGFM EEAQIHHQPP PPQQQKQLED FLGGDSAAAL  120
VRYSDSQTET QDSSLTHIST SAAAAYFNSR QDLQSIPGIQ AFSTNSGSDV DDSASVPRTQ  180
AIATAEFTGH SIDSVNALPY SQRPTGALSL AVNPQTAETA IVPVDSDTSK KIPDTFGQRT  240
SIYRGVTRHR WTGRYEAHLW DNSSRREGQA RKGRQVYLGG YDKEDKAARA YDLAALKYWG  300
ATATTNFPIS NYTNELEDMK NMTKQEFIAS LRRKSSGFSR GASIYRGVTR HHQQGRWQAR  360
IGRVAGNKDL YLGTFATEEE AAEAYDVAAI KFRGMSAVTN FEMSRYDVDT ILKSALPIGG  420
AAKRLKLSLE PEQHSPALSG GSNSSSSINF GAIPPVSAIP CGVSFDSSAA ALYHHHPTLF  480
HHLHSGGNAD LSADIPAALP FQASPAEFFI WPHPSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.1	1e-148	AP2 family protein