PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182891.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 557aa MW: 59377.6 Da PI: 7.3908

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.2	8.1e-25	210	254	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_019182891.1 210 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 254 79****************************************985 PP
2	QLQ	55.7	1.4e-19	141	176	1	36
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 ++FT++Q+++L++Q+l+yK+L+ n+P+P+ Ll+ ++ XP_019182891.1 141 GPFTPSQWMELEHQALIYKHLVTNVPIPSSLLVSLK 176 59******************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MDFGLVGMEG MVGGGDPSGG GGGDHGSGKI KQERSGLGEE TWRLSKAPRT CSSEEDLNGV 60 NPTSLLLRSG DNNGRGHTTM LSFSSSSKSE EIPFLSVNGE DSSASISIPF FQSQPKQGLP 120 SVYAPGGVNE ATRGGFSLFR GPFTPSQWME LEHQALIYKH LVTNVPIPSS LLVSLKKSLS 180 PYTFSGLSSR PYASNWGWGP FHLGFAGNTD PEPGRCRRTD GKKWRCSRDA VPDQKYCERH 240 INRGRHRSRK PVEGQTGRAA SGTAASKAVP VVASSSSSAP VIPSGGGASN SFSAVQHQFK 300 SMQQCPANPS TDHLTSNRTQ GLSVISPSMN LKSKDSAISI QKQQNPLEES SARSEFGFLS 360 SDSLLNLSQK SHVNSKNSGT LDFNCHVTNE QHPVHHFTDI WTKEQSGCDS VSWPELKPDW 420 TQLSMSSIPM TASNFSSSSS SPRQENTSNW LPVSWGNSMG GPLGEALNST SGGSAGSGKN 480 SSNLNLMTEA WDSNPHLGSP PPADLQKSDL CLTLKQQFGG KQSQDDKKTT AALEDGMGDE 540 VIGSNLVSSV YSINVCL

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MDFGLVGMEG MVGGGDPSGG GGGDHGSGKI KQERSGLGEE TWRLSKAPRT CSSEEDLNGV  60
NPTSLLLRSG DNNGRGHTTM LSFSSSSKSE EIPFLSVNGE DSSASISIPF FQSQPKQGLP  120
SVYAPGGVNE ATRGGFSLFR GPFTPSQWME LEHQALIYKH LVTNVPIPSS LLVSLKKSLS  180
PYTFSGLSSR PYASNWGWGP FHLGFAGNTD PEPGRCRRTD GKKWRCSRDA VPDQKYCERH  240
INRGRHRSRK PVEGQTGRAA SGTAASKAVP VVASSSSSAP VIPSGGGASN SFSAVQHQFK  300
SMQQCPANPS TDHLTSNRTQ GLSVISPSMN LKSKDSAISI QKQQNPLEES SARSEFGFLS  360
SDSLLNLSQK SHVNSKNSGT LDFNCHVTNE QHPVHHFTDI WTKEQSGCDS VSWPELKPDW  420
TQLSMSSIPM TASNFSSSSS SPRQENTSNW LPVSWGNSMG GPLGEALNST SGGSAGSGKN  480
SSNLNLMTEA WDSNPHLGSP PPADLQKSDL CLTLKQQFGG KQSQDDKKTT AALEDGMGDE  540
VIGSNLVSSV YSINVCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	3e-69	GRF family protein