PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019182870.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 363aa    MW: 39430.8 Da    PI: 5.0769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019182870.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.8e-16113159455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  XP_019182870.1 113 FHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 159
                     5*************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MANAYATAHS SSEPDDIFAF VNQILLRSSS HPQVLQETQP YAAVADSSSA GFLPSLGYLP  60
AGDVRSSSVG TAENEPDQYD CESEENSEAV VEEASAEGAR PTRNSKRSRA AEFHNLSEKR  120
RRSRINEKMK ALQNLIPNSN KTDKASMLDE AIEYLKQLQL QVQMLTIRNG LSLYPMCING  180
VLNQNQYPIV AMGAYGGNRS PNANMAGAVH MNQDGFLNAM FTPSNNGPIP KLTSVATFSN  240
IVSSEASADM EPAMQPHLHP FQPPISFKEN CRAGILSPEQ MDGCHSRTKP IGENTTPSNP  300
FVTELSGLRN DTFEFCYLRR NQSDAASYPS NVDCSLVIPP QSYSAKAGTS ASADSIKTES  360
SNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.19e-40bHLH family protein