PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182808.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 276aa MW: 30409.3 Da PI: 9.2256

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.2	5.8e-18	132	186	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+++++k+q Lee F+++ +++ ++++LA+ l+L rqV vWFqNrRa+ k XP_019182808.1 132 RKKHRLSKSQSALLEESFRQHTTLNPVQKQQLARALNLRPRQVEVWFQNRRARTK 186 78899************************************************98 PP
2	HD-ZIP_I/II	119.2	2.1e-38	132	221	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk q++lLEesF+++++L+p +K++lar+L+l+prqv+vWFqnrRARtk+kq+E dye Lk+++++l++en+rL+kev+eL+ +l XP_019182808.1 132 RKKHRLSKSQSALLEESFRQHTTLNPVQKQQLARALNLRPRQVEVWFQNRRARTKLKQIEADYELLKKCCQTLTDENRRLKKEVQELK-AL 221 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MASHQKNICS TDLTLGMGFA SSSSSYSSYN HLPYISKPKT TSSSSVIFEP PSLNLSLSCE 60 TSDHVMNKVV FNDQLSAAGQ DSSTSSYQSN ATPAKREREI GINSAAAGEE ERAASRMLIV 120 SDEEYDDGCN VRKKHRLSKS QSALLEESFR QHTTLNPVQK QQLARALNLR PRQVEVWFQN 180 RRARTKLKQI EADYELLKKC CQTLTDENRR LKKEVQELKA LKLMKPSLYM QAAALSKCPS 240 CSGGGPGGAC KTTTNTSFTM APIPHFYNPV TSPSAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	189	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	8e-61	HD-ZIP family protein