PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182652.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 517aa MW: 54461.6 Da PI: 8.5878

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182652.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_019182652.1 63 FVCEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	14.5	0.00011	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H + + XP_019182652.1 139 WKCDKCSKKYAVQSDLKAHSKIC 161 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MRTDADKNDS PGSGEASVSS SENQAAPPPK ATSKKKRNLP GMPDPDAEVI ALSPKTLLAT 60 NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRSSTEVK KRVYVCPEPT CVHHHPSRAL 120 GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDLKAHSKI CGTKEYRCDC GTLFSRRDSF 180 ITHRAFCDVL AEESAKAQDE VMAPSCEEEP KPASPPPPPQ SPPAQQPSPP PPPPPPVVPP 240 ATTIIPSVPT VKTPELPGST NPNPNPNPSG SMPKQVVEET TVITSLTGSC SSSSSSSSKV 300 SGSVFASLFA STTAPGSLQP QTSGFPDLFR PMAAERVPEI GPPLSTEPIS LCLAMSHGSS 360 IFGQERRQYA PAPQPAMSAT ALLQKAAQMG AASSNSSLLR GLDIMSSTTS SSNPDHEFRG 420 RRQLIDTDGA SLAAGLGLGL PCDGGSGLKE LMLGTPSVFG PKYPTLDLLG LGMAVNGTPT 480 SGLSALMTSI GGNLDMAAAA GSFGSSDFTG KDTGRSS

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MRTDADKNDS PGSGEASVSS SENQAAPPPK ATSKKKRNLP GMPDPDAEVI ALSPKTLLAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRSSTEVK KRVYVCPEPT CVHHHPSRAL  120
GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDLKAHSKI CGTKEYRCDC GTLFSRRDSF  180
ITHRAFCDVL AEESAKAQDE VMAPSCEEEP KPASPPPPPQ SPPAQQPSPP PPPPPPVVPP  240
ATTIIPSVPT VKTPELPGST NPNPNPNPSG SMPKQVVEET TVITSLTGSC SSSSSSSSKV  300
SGSVFASLFA STTAPGSLQP QTSGFPDLFR PMAAERVPEI GPPLSTEPIS LCLAMSHGSS  360
IFGQERRQYA PAPQPAMSAT ALLQKAAQMG AASSNSSLLR GLDIMSSTTS SSNPDHEFRG  420
RRQLIDTDGA SLAAGLGLGL PCDGGSGLKE LMLGTPSVFG PKYPTLDLLG LGMAVNGTPT  480
SGLSALMTSI GGNLDMAAAA GSFGSSDFTG KDTGRSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-100	C2H2 family protein