PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019182591.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 339aa MW: 38218.8 Da PI: 8.2653 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 47.5 | 2.8e-15 | 264 | 288 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG+C+yG++C+FaHg XP_019182591.1 264 KTELCNKWQETGECPYGENCQFAHG 288 9***********************8 PP | |||||||
2 | zf-CCCH | 19.6 | 1.6e-06 | 301 | 326 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ C+yG rC+F H+ XP_019182591.1 301 YKTEVCRMVLAGDNCPYGHRCHFRHS 326 9**********55**********997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence |
MLKESSSFDG VRASSISRSA VGPNNFSGGS SSPHYNCNPF LSPSSPRQLD LTDYSTNYYS 60 SLFVHNCKSP SDTSFDDAEA MATERRLFHA SFVLEYQQLY NRYTLCLAHL QESLKEVNAL 120 RQENESIRLA NADLVQRLSL LSQATIQNCL LSDFSHLGIG VRASPIRDTL TTESKPPNVR 180 PPPGAIEQHR LERRNQEQVP IPKSISVRSS GYLKMKAQDG SAGGQSSHRL NTQPLGRSQR 240 VYVPGVKRDE EALEFDVYNQ GMLKTELCNK WQETGECPYG ENCQFAHGIK ELRPVIRHPR 300 YKTEVCRMVL AGDNCPYGHR CHFRHSITDQ DRPSSNHLR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 2e-71 | C3H family protein |