PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182453.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 289aa MW: 32493.9 Da PI: 8.4627

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182453.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl XP_019182453.1 14 KGPWSPDEDAKLKAYIHQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.8	4.3e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_019182453.1 69 GEFTREEDNIICALYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 78*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MGRAPCCDKA NVKKGPWSPD EDAKLKAYIH QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGE FTREEDNIIC ALYLSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGI 120 KQRRDHSQEM MSSKERDKLQ ADQTAAMNNV CPPPVAFPAP EVLCEYPMYT TMDCITNSYS 180 SSSFATNNYS PLVMSDVIAT NDVFRPAFSF PTTALNHHDF LYGYNSPPPQ QQLADRYSST 240 ITSASSSEGT SSNWEDISSL VYPPPKMVST NHHLDEVCPP TMFSMGFKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	3e-79	MYB family protein