PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019182421.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 228aa MW: 25741.6 Da PI: 5.9853 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.3e-19 | 62 | 115 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le+ F +r++ e++ +LA++lgL+ rqV vWFqNrRa++k+ XP_019182421.1 62 KRKLSEEQVNLLEQSFGDERKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 115 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 119.8 | 1.4e-38 | 61 | 151 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kr+ls+eqv+lLE+sF e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + en+rLe++v +L+e+l XP_019182421.1 61 RKRKLSEEQVNLLEQSFGDERKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKAEHDSTVLENCRLESQVLKLKEQLC 151 8**************************************************************************************9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MAGCGGINNN QVDDQMALIS HFYPDIYTQL LPDQGEATEA KPRRRRKKNK AGGDGGMTGI 60 RKRKLSEEQV NLLEQSFGDE RKLESERKDR LASELGLDPR QVAVWFQNRR ARWKNKKLEE 120 EYSKLKAEHD STVLENCRLE SQVLKLKEQL CDAENRIQSL LERRHHGGGG GGGGGDGVSS 180 NSPSTSSFPT EAPTFFGEFG MDGLDDEFYV DENHYGHVVD QWIKFYGM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 64 | RRRRKKNKAGGDGGMTGIRKRK |
2 | 44 | 65 | RRRRKKNKAGGDGGMTGIRKRK |
3 | 45 | 66 | RRRRKKNKAGGDGGMTGIRKRK |
4 | 46 | 67 | RRRRKKNKAGGDGGMTGIRKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 2e-60 | HD-ZIP family protein |