PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182006.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HSF

Protein Properties

Length: 525aa MW: 57926.6 Da PI: 4.6488

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182006.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116	2.4e-36	38	129	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++d+++++++sws ++nsfvv+d+ efak++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ XP_019182006.1 38 FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLRS 123 9******************999*************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i r+k XP_019182006.1 124 ISRRKP 129 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MELNSSSGGK GAAAGDGAQP SLPPQPAPMP STNSPPPFLV KTYDMVDDPS TDKIVSWSPT 60 NNSFVVWDPP EFAKDLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL 120 LRSISRRKPA HGQNHPQQQP QGQSSSVGAC VEVGKFGLEE EVERLKRDKN VLMQELVRLR 180 QQQQSTDNQL QTMVQRLQGM EQRQQQMMSF LAKAVNSPGF LAHFVQQQND SNRRITEGNK 240 KRRLKQEVGL DDHSVSPADS QIVKYQPMND AAAAVLRQIM KMDSSPRLEN FGSSSPSPDN 300 FMISDVSSQS NNTLDHGSSP NHVSGVTPVS GQPFVPATSS VTGQGSLPTI SEIQSSPLVN 360 SAEMASDQFS DISPLVGAQE LPPVSLSPSH MMMPEISQLR DIVPESNMDI LGSEASSGNL 420 IDPTSLVGNG GMPLEIDGFS PDPQIEWQNG LMDDDIPLDS SFWEKFLQSP PPVEVDQMDS 480 TILEDSMVEE TKKVENGWNK ADHMEQLTEQ MGQLTSKNNK DQPPL

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MELNSSSGGK GAAAGDGAQP SLPPQPAPMP STNSPPPFLV KTYDMVDDPS TDKIVSWSPT  60
NNSFVVWDPP EFAKDLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL  120
LRSISRRKPA HGQNHPQQQP QGQSSSVGAC VEVGKFGLEE EVERLKRDKN VLMQELVRLR  180
QQQQSTDNQL QTMVQRLQGM EQRQQQMMSF LAKAVNSPGF LAHFVQQQND SNRRITEGNK  240
KRRLKQEVGL DDHSVSPADS QIVKYQPMND AAAAVLRQIM KMDSSPRLEN FGSSSPSPDN  300
FMISDVSSQS NNTLDHGSSP NHVSGVTPVS GQPFVPATSS VTGQGSLPTI SEIQSSPLVN  360
SAEMASDQFS DISPLVGAQE LPPVSLSPSH MMMPEISQLR DIVPESNMDI LGSEASSGNL  420
IDPTSLVGNG GMPLEIDGFS PDPQIEWQNG LMDDDIPLDS SFWEKFLQSP PPVEVDQMDS  480
TILEDSMVEE TKKVENGWNK ADHMEQLTEQ MGQLTSKNNK DQPPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	246	NKKRRLKQ
2	240	245	KKRRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-113	HSF family protein