PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181968.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 344aa MW: 37899.6 Da PI: 8.5975

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.4	1.7e-29	177	236	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed++v++ tYegeHnh+ XP_019181968.1 177 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSVEDQSVLVATYEGEHNHP 236 58*************************99**************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MEFTSLVDTS LDLNIKPLRP AADAGVPKQE VESNFIGLGI NMTIKNEADG LIEELNRVSA 60 ENKKLTEMLT IMCENYNVLR EKLKGYMMKN NNGCEENSSP VGVLPQGSRK RKSESNNVNT 120 NGGHSESSSS DEDSVKKPRE EQQHHHHHHH QQQQQHIKSK TSKVYVRTES SDTGLIVKDG 180 YQWRKYGQKV TRDNPSPRAY FKCSFAPTCP VKKKVQRSVE DQSVLVATYE GEHNHPHPSK 240 IDQSSAAAPS TPATITTRPA PAAAAASAGP TITLDLTEPK PSLPITATAA AARVLPQLAD 300 RPDFHQFLIE QMASSLTKDP SFKAALAAAI SGKFIFPHNQ TEKW

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MEFTSLVDTS LDLNIKPLRP AADAGVPKQE VESNFIGLGI NMTIKNEADG LIEELNRVSA  60
ENKKLTEMLT IMCENYNVLR EKLKGYMMKN NNGCEENSSP VGVLPQGSRK RKSESNNVNT  120
NGGHSESSSS DEDSVKKPRE EQQHHHHHHH QQQQQHIKSK TSKVYVRTES SDTGLIVKDG  180
YQWRKYGQKV TRDNPSPRAY FKCSFAPTCP VKKKVQRSVE DQSVLVATYE GEHNHPHPSK  240
IDQSSAAAPS TPATITTRPA PAAAAASAGP TITLDLTEPK PSLPITATAA AARVLPQLAD  300
RPDFHQFLIE QMASSLTKDP SFKAALAAAI SGKFIFPHNQ TEKW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	113	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	2e-87	WRKY family protein