PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019181648.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LSD | ||||||||
Protein Properties | Length: 143aa MW: 14922.5 Da PI: 7.9166 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 46.2 | 7.4e-15 | 29 | 53 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP GA+sV+Ca+C++V XP_019181648.1 29 CSGCRNLLMYPVGATSVCCAVCNAV 53 ************************9 PP | |||||||
2 | zf-LSD1 | 46.8 | 4.7e-15 | 68 | 92 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV XP_019181648.1 68 CGGCHTLLMYIRGATSVQCSCCHTV 92 ************************9 PP | |||||||
3 | zf-LSD1 | 41.9 | 1.6e-13 | 106 | 130 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V XP_019181648.1 106 CGNCRMLLMYQYGARSVKCAVCNFV 130 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence |
MPVPLAPYPT PPAPYMPPAN AGTQSQLVCS GCRNLLMYPV GATSVCCAVC NAVTAVPPPG 60 TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLAMEANQ VAHVNCGNCR MLLMYQYGAR 120 SVKCAVCNFV TSVGVSASTN DQK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 5e-66 | LSD family protein |