PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181619.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 604aa MW: 67059.3 Da PI: 8.3838

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181619.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.5	2.9e-20	63	161	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA+ vGF+vr s+ +++ r+g +k +vCs+eg+++ +++ + +r+r+++r+gC+a+l++k+ +dg+++v+ +el H XP_019181619.1 63 DFYRQYASLVGFDVRCSSLRRN-REGVAVKDVLVCSREGFKQAVQSSvvvdaaldqaPVAPKRRRVSNRVGCRARLVLKMGDDGVFVVHFIELRH 156 6***************9999.788899***********999***999889999**************************** PP FAR1 86 nHela 90 nH l+ XP_019181619.1 157 NHCLC 161 998 PP

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence
MVVAFCIGLK VFVLWVVRAR SDSQQGCVMD VSPDGTKFWT PSCDAAVRPF QGQTFPSLAH 60 GIDFYRQYAS LVGFDVRCSS LRRNREGVAV KDVLVCSREG FKQAVQSSVV VDAALDQAPV 120 APKRRRVSNR VGCRARLVLK MGDDGVFVVH FIELRHNHCL CSDVAKPFLR GNRSMDVQHQ 180 IFVLKCARAN VGPNRSFRLA REFAGSYSNV GATCVNFKNL KRDLMAFIGT SDAHIVVKKY 240 AKKVDDCPDY VFRYDVDSQD QLCRAFWTDP IAKENFSAFG EVVSFDATYG TNRYGMVLVP 300 FTGVDNHKRG VTFAMGLISR EDVDSYVWLL QQFKSAMGCV PSCTITDQDP SMRVAVPQVF 360 DTTRHRFWAI DAQRLAQAKL NAECEGHFPL CQTPMLIEKH AAAVYTINVF YDVQAEVIAG 420 SFSCRAVRSN VEGLVTRYEV EDDDGPVRTV SFDSGNDGVE CTCNMFSRVL GVQRGGDSEV 480 DVAIGEAWAE FFSCVTLASR SVDHVTKLNA ALKDFNAFLL AENGPTVRAS SSKKQLFESF 540 CGASPDGQVN VRPPPISNNK GGGKRYKSSR ELAIEKSGRR QRQCQTCEKY GHNSRTCPMR 600 NVDV

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence

MVVAFCIGLK VFVLWVVRAR SDSQQGCVMD VSPDGTKFWT PSCDAAVRPF QGQTFPSLAH  60
GIDFYRQYAS LVGFDVRCSS LRRNREGVAV KDVLVCSREG FKQAVQSSVV VDAALDQAPV  120
APKRRRVSNR VGCRARLVLK MGDDGVFVVH FIELRHNHCL CSDVAKPFLR GNRSMDVQHQ  180
IFVLKCARAN VGPNRSFRLA REFAGSYSNV GATCVNFKNL KRDLMAFIGT SDAHIVVKKY  240
AKKVDDCPDY VFRYDVDSQD QLCRAFWTDP IAKENFSAFG EVVSFDATYG TNRYGMVLVP  300
FTGVDNHKRG VTFAMGLISR EDVDSYVWLL QQFKSAMGCV PSCTITDQDP SMRVAVPQVF  360
DTTRHRFWAI DAQRLAQAKL NAECEGHFPL CQTPMLIEKH AAAVYTINVF YDVQAEVIAG  420
SFSCRAVRSN VEGLVTRYEV EDDDGPVRTV SFDSGNDGVE CTCNMFSRVL GVQRGGDSEV  480
DVAIGEAWAE FFSCVTLASR SVDHVTKLNA ALKDFNAFLL AENGPTVRAS SSKKQLFESF  540
CGASPDGQVN VRPPPISNNK GGGKRYKSSR ELAIEKSGRR QRQCQTCEKY GHNSRTCPMR  600
NVDV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	127	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-39	FAR1 family protein