PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181401.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 746aa MW: 84134.4 Da PI: 7.5056

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.7	6.1e-21	69	153	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel+ XP_019181401.1 69 VYNSYAYTLGFSVRKGHQRYKGSSNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 153 7******************99999***********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence
MEDGTEQTNS AVDDWHSIQG DLVIVLAIVP FVSEGIVDGS VDVDGSSSIT VDQDLVGLVV 60 SNADEAFEVY NSYAYTLGFS VRKGHQRYKG SSNTIQMKKF CCSKAGYKAN SGVKAYSKID 120 TRTGCGAFVQ FDVGDDGLWT VTKHEKVHNH ELCVFNKSHL LRSHRSVGDN QLLYLQGLKD 180 SGVALADGIR FLKHQSGGSP LVGFTSRDAY NSMAADTVKR LDGTDSNSLI EIFRRRQSTE 240 TDFFFDFELD LDARLCSFFW RDGQMRRDYE VFGDLLVHDT TYRTNKYDMI CAPFVGMNHH 300 CMNVMFGCGF LMNERIESFV WLFKVFSRSM GGKSPQTIMT DQCAAMAAAI SKVFPTSRHR 360 LCIWHIETEA EFQFYWTRLV TDYKCHKNTW LEKLYDCREK WCPAFNKDYF SGGILSSQRS 420 ETTNHSISRR LSKTAGLCDF YSSFVSVISE WRSKENGEDF RCAQGVPAMM MEHVKLLSHA 480 REVYTIEIYF LFEEQFMKGS ACHQEMVLND GRQQKYHVWR PDIDIIRHEV SFNAANLDIS 540 CSCKLMSELG ILCCHCIRIL HVHCVSSIPD KYILKRWTKK VIDGRNVNID SMVYNVGVPP 600 SIWVFDISRK FQRLVVSSQD SSVARKLCDE AVDDVKKKVE AEVGHVHIEE CGVSSSSGGV 660 QNPSSRRLKG ERNKRRSGVI EKKYSLARGR RSAANKAALS TKGAVQSLVL ENISKLAGDG 720 YLVHPSSSSS DFVQFSKGLD DNVGVD

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence

MEDGTEQTNS AVDDWHSIQG DLVIVLAIVP FVSEGIVDGS VDVDGSSSIT VDQDLVGLVV  60
SNADEAFEVY NSYAYTLGFS VRKGHQRYKG SSNTIQMKKF CCSKAGYKAN SGVKAYSKID  120
TRTGCGAFVQ FDVGDDGLWT VTKHEKVHNH ELCVFNKSHL LRSHRSVGDN QLLYLQGLKD  180
SGVALADGIR FLKHQSGGSP LVGFTSRDAY NSMAADTVKR LDGTDSNSLI EIFRRRQSTE  240
TDFFFDFELD LDARLCSFFW RDGQMRRDYE VFGDLLVHDT TYRTNKYDMI CAPFVGMNHH  300
CMNVMFGCGF LMNERIESFV WLFKVFSRSM GGKSPQTIMT DQCAAMAAAI SKVFPTSRHR  360
LCIWHIETEA EFQFYWTRLV TDYKCHKNTW LEKLYDCREK WCPAFNKDYF SGGILSSQRS  420
ETTNHSISRR LSKTAGLCDF YSSFVSVISE WRSKENGEDF RCAQGVPAMM MEHVKLLSHA  480
REVYTIEIYF LFEEQFMKGS ACHQEMVLND GRQQKYHVWR PDIDIIRHEV SFNAANLDIS  540
CSCKLMSELG ILCCHCIRIL HVHCVSSIPD KYILKRWTKK VIDGRNVNID SMVYNVGVPP  600
SIWVFDISRK FQRLVVSSQD SSVARKLCDE AVDDVKKKVE AEVGHVHIEE CGVSSSSGGV  660
QNPSSRRLKG ERNKRRSGVI EKKYSLARGR RSAANKAALS TKGAVQSLVL ENISKLAGDG  720
YLVHPSSSSS DFVQFSKGLD DNVGVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-77	FAR1 family protein