PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019181240.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 480aa MW: 52359 Da PI: 6.8157

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019181240.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21	6.8e-07	18	48	5	35
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ ++++++ lfC+ + lC C ++ H XP_019181240.1 18 PCDFCNDQPAVLFCRADAAKLCLFCDQHVHA 48 6***************************995 PP
2	zf-B_box	19.2	2.6e-06	59	103	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C++++ +++ C + + lC++C H + H+++p XP_019181240.1 59 SQICDNCGAEPVAVRCSSENLVLCQECDWDAHAScavsaaHDRSP 103 579*************************99997788888888777 PP
3	CCT	65	2.2e-22	432	475	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeKrktR+++K+irYesRKa+A++R+RvKGrFvk+a XP_019181240.1 432 RGNAMLRYKEKRKTRRYDKHIRYESRKARADTRKRVKGRFVKAA 475 7789**************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MEASTHPSSD GVRGKTVPCD FCNDQPAVLF CRADAAKLCL FCDQHVHAAN ALSRKHLRSQ 60 ICDNCGAEPV AVRCSSENLV LCQECDWDAH ASCAVSAAHD RSPVEAFSGC PVAAELAGIW 120 GLEIEEKKSN QLPGPNPTWT GLLDPWMPKE ISPSVLLQDL MVPSNNPVVY SNPAGGCEPS 180 KKQTPSCGKN KPVILKQLVE LFKREALDGG AAAGGEDIVP RTPNGGGSGW QGNAADGGDG 240 AAAALNHHFQ PEQQQPQNVP FTSLLMMQTP MKENDRMVEG NMLWNNASRD RSPQIWDFNL 300 GQLRDHDESS PIEVGYGAND VAYMMKSYSE LLKEASLANP KGSELSRMNF SVTHEDLAAF 360 GNVSNNPTAS QGPATSESNN IPRLQPPLVS GYSKPKCHSK DIHFMDQTIL VDSESATPSM 420 TKADMEMLVK NRGNAMLRYK EKRKTRRYDK HIRYESRKAR ADTRKRVKGR FVKAAEAPDG

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MEASTHPSSD GVRGKTVPCD FCNDQPAVLF CRADAAKLCL FCDQHVHAAN ALSRKHLRSQ  60
ICDNCGAEPV AVRCSSENLV LCQECDWDAH ASCAVSAAHD RSPVEAFSGC PVAAELAGIW  120
GLEIEEKKSN QLPGPNPTWT GLLDPWMPKE ISPSVLLQDL MVPSNNPVVY SNPAGGCEPS  180
KKQTPSCGKN KPVILKQLVE LFKREALDGG AAAGGEDIVP RTPNGGGSGW QGNAADGGDG  240
AAAALNHHFQ PEQQQPQNVP FTSLLMMQTP MKENDRMVEG NMLWNNASRD RSPQIWDFNL  300
GQLRDHDESS PIEVGYGAND VAYMMKSYSE LLKEASLANP KGSELSRMNF SVTHEDLAAF  360
GNVSNNPTAS QGPATSESNN IPRLQPPLVS GYSKPKCHSK DIHFMDQTIL VDSESATPSM  420
TKADMEMLVK NRGNAMLRYK EKRKTRRYDK HIRYESRKAR ADTRKRVKGR FVKAAEAPDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-106	CO-like family protein