PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019180945.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 362aa    MW: 39843.1 Da    PI: 10.0997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019180945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-05131153223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp Cg+ F  +++L+ H+ + H
  XP_019180945.1 131 SCPVCGQIFMKPDTLELHQAVrH 153
                     8******************9888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MAINKNCKKN PKPQTRSHHL HKPHSWAVVR SLFTCKHLQP HLEQQPKEQR HRKPKQKPPQ  60
TLEEISKVRK KMGPQHPSNS SSSSPTSPSS IVGSLRGMPF RKLSGCYECR MVVDPVLGLT  120
RDPSLRTTVC SCPVCGQIFM KPDTLELHQA VRHAVSELGV EDTSRNVVEI IFQSSWLKKH  180
NPICTIDRIL KVHNTPKVIS RFEEYRDAIK AKANKLPKKH PRCVADGNEL LRFHSTTFMC  240
SLGLNGSSNL CNSIPSCNVC GIIKNGFKGA GDIAGKGILT TATSWKAHVS SGAAADEEKR  300
AMLVCRVIAG RVKKSLQGSL EEYDSVTGGA GAGAGGYGDL EELYVFNPKA VLPCFVVIYR  360
GF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.14e-90C2H2 family protein