PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180928.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 990aa MW: 109670 Da PI: 7.2962

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180928.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.8	2e-40	148	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C++dl++ k+yhrrhkvCevhska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_019180928.1 148 VCQVEDCQMDLTNSKDYHRRHKVCEVHSKATKALVGNAMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNSRRRKTHP 225 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 990 aa Download sequence
MESRIGGKGH HLYGPVIPDL KAVGKRSMEW DLNDWKWDGD LFSAVPMNCI PSDCRSRQLF 60 PDESQIPANN GVPNGSDEVV VLNEKGKKEM EKRRRLVVVE QEDLNECASL NLKLGGQVFP 120 ITEGEMEKGE RKNGKKAKVA GGSSNRAVCQ VEDCQMDLTN SKDYHRRHKV CEVHSKATKA 180 LVGNAMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNSRR RKTHPENVPN GAPMNDERGT 240 NYLLISLLKI LANMHGATNS SDQTKDQDIL SHLLRNLASM AGSNDERNPS GPLPISQDLH 300 NAGTSAGSPE KLVGNSANLP TPEVLGKSMG AVNAEPGVSQ NPSTQPELIF PRKDCTTFKA 360 ISTDNLVRQT KLHNIDLNNV YDDSQDCMGV LKSSDHCQNP GNISSACPLW VCQDPHKSTS 420 TRTSGNSAST SSFSPSNSSG EAQSRTDRIV FKLFGKDPSD FPIAMRKQII DWLSNSPTEI 480 ESYIRPGCVI LTIYLRMDKS IWEELCCDLS SSLRKLLDSS SDSFWKTGWI YTRVQNRVAF 540 VFNGQVVLDT PLPVKGYNNC RISSVKPIAV PVSKGAQFLV KGFNLSRSTA RFLCALDGKY 600 LVQGNCGDMV EADSLVDQND HNEIQSLSFP CSIPNVTGRG FIEVEDHGLS GSFFPFIVAE 660 EDVCSEICTL ESSIDVAETA SDSQEEPEKL EARNRALDFI HDMGWLLHRS HLKFRSGSNS 720 SHFPFDRFRW LIEFSVDRDW CAVVKKLLDI LFGGIVDAGE HSSLEMALQD IGLLHQAVRG 780 NCRRMVEALL QYCPDKGPDN SELVKTQHGG HYIFRPDAIV IGGLTPLHIV ASQKGLENLL 840 DALINDPGQV GVQAWKNARD STGLTPNDYA SLRGHYSYIH LIQKKTDPKP ANVHVVLDIP 900 GDTSQKPKAS SFQTEKLVTT KPSTRSCRRC EQKLQYGSCS TSLAIYRPAM LSMVAIAAIC 960 VCVALLFKSS PEVLYVFQPF RWELLKYGSS

Sequence ? help Back to Top

Protein Sequence Length: 990 aa Download sequence

MESRIGGKGH HLYGPVIPDL KAVGKRSMEW DLNDWKWDGD LFSAVPMNCI PSDCRSRQLF  60
PDESQIPANN GVPNGSDEVV VLNEKGKKEM EKRRRLVVVE QEDLNECASL NLKLGGQVFP  120
ITEGEMEKGE RKNGKKAKVA GGSSNRAVCQ VEDCQMDLTN SKDYHRRHKV CEVHSKATKA  180
LVGNAMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNSRR RKTHPENVPN GAPMNDERGT  240
NYLLISLLKI LANMHGATNS SDQTKDQDIL SHLLRNLASM AGSNDERNPS GPLPISQDLH  300
NAGTSAGSPE KLVGNSANLP TPEVLGKSMG AVNAEPGVSQ NPSTQPELIF PRKDCTTFKA  360
ISTDNLVRQT KLHNIDLNNV YDDSQDCMGV LKSSDHCQNP GNISSACPLW VCQDPHKSTS  420
TRTSGNSAST SSFSPSNSSG EAQSRTDRIV FKLFGKDPSD FPIAMRKQII DWLSNSPTEI  480
ESYIRPGCVI LTIYLRMDKS IWEELCCDLS SSLRKLLDSS SDSFWKTGWI YTRVQNRVAF  540
VFNGQVVLDT PLPVKGYNNC RISSVKPIAV PVSKGAQFLV KGFNLSRSTA RFLCALDGKY  600
LVQGNCGDMV EADSLVDQND HNEIQSLSFP CSIPNVTGRG FIEVEDHGLS GSFFPFIVAE  660
EDVCSEICTL ESSIDVAETA SDSQEEPEKL EARNRALDFI HDMGWLLHRS HLKFRSGSNS  720
SHFPFDRFRW LIEFSVDRDW CAVVKKLLDI LFGGIVDAGE HSSLEMALQD IGLLHQAVRG  780
NCRRMVEALL QYCPDKGPDN SELVKTQHGG HYIFRPDAIV IGGLTPLHIV ASQKGLENLL  840
DALINDPGQV GVQAWKNARD STGLTPNDYA SLRGHYSYIH LIQKKTDPKP ANVHVVLDIP  900
GDTSQKPKAS SFQTEKLVTT KPSTRSCRRC EQKLQYGSCS TSLAIYRPAM LSMVAIAAIC  960
VCVALLFKSS PEVLYVFQPF RWELLKYGSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	96	KRRRL
2	218	223	SRRRKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein