PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180816.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HSF

Protein Properties

Length: 357aa MW: 40336.1 Da PI: 4.919

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.1	4.4e-36	55	146	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+++ed++++++isws +nsf+v+d+++fa+++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ll++ XP_019180816.1 55 FLTKTYDLVEDPTTNDIISWSGGNNSFIVWDPRNFATNLLPRYFKHNNFSSFVRQLNTYGFRKVNPDK---------WEFANEGFLRGQRHLLRT 140 9******************999*************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k+ XP_019180816.1 141 IRRRKT 146 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MDPFGSRVKE EMMGWSSSSL SVNEDCFDMS EDNHNHDSSV PQPLEGLHDT GPPPFLTKTY 60 DLVEDPTTND IISWSGGNNS FIVWDPRNFA TNLLPRYFKH NNFSSFVRQL NTYGFRKVNP 120 DKWEFANEGF LRGQRHLLRT IRRRKTPPQT QLQASGQGGG LECCVEVGRF GFEGEVDRLK 180 RDKEVLMMEL VKLRQNQQTT KACLKAMEQK IKGTEVKQQQ MMSFLAKAMK NPDFMHQIMQ 240 QRERRKELAE AISNKRRRPI DQGPSNLTTA HNDLQGFGGV SGYGSLELEE LAMSMEEPGS 300 SGNMMMNLNQ ECGGGGGGGK GPDDEGFWED LLNDSNKLIE EEIGLLSFGD DRAYDDD

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MDPFGSRVKE EMMGWSSSSL SVNEDCFDMS EDNHNHDSSV PQPLEGLHDT GPPPFLTKTY  60
DLVEDPTTND IISWSGGNNS FIVWDPRNFA TNLLPRYFKH NNFSSFVRQL NTYGFRKVNP  120
DKWEFANEGF LRGQRHLLRT IRRRKTPPQT QLQASGQGGG LECCVEVGRF GFEGEVDRLK  180
RDKEVLMMEL VKLRQNQQTT KACLKAMEQK IKGTEVKQQQ MMSFLAKAMK NPDFMHQIMQ  240
QRERRKELAE AISNKRRRPI DQGPSNLTTA HNDLQGFGGV SGYGSLELEE LAMSMEEPGS  300
SGNMMMNLNQ ECGGGGGGGK GPDDEGFWED LLNDSNKLIE EEIGLLSFGD DRAYDDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	258	RRKELAEAISNKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-117	HSF family protein