PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180806.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 768aa MW: 87775.4 Da PI: 8.1051

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.8	2.7e-21	52	126	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn YA++vGF++r+ + ++s+ +g++++r+fvC keg++++ tr+gC a +kv+k ++gkw+++++++eHnH+l XP_019180806.1 52 EFYNLYATKVGFRIRIGQLYRSRVDGSVISRRFVCFKEGFQTN--------------TRVGCPAFIKVQKADSGKWVIASINKEHNHDL 126 6*************************************876..............799*************************99 PP
2	FAR1	62.6	1.2e-19	201	276	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY++YA ++GF+vr+ + +sk +g+it+r+fvCskeg++++ +r+gC a ++++++++g+w+v++ + eHnH+l XP_019180806.1 201 KFYSSYAANTGFKVRIGQLFRSKLDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQESGRWVVDRHQIEHNHDLD 276 6************************************9998..............4899************************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence
MNREDLGNIM TVRAKPTGSL VLKNNAHHDD EGESRPEPYV GLEFDSAEEA QEFYNLYATK 60 VGFRIRIGQL YRSRVDGSVI SRRFVCFKEG FQTNTRVGCP AFIKVQKADS GKWVIASINK 120 EHNHDLELPG EITPARIQRK SLPAPRTTTV LSARTGLRST DEDGPSGVLD AKRLKREEVG 180 GEPKGEPCKG LEFSSANEAY KFYSSYAANT GFKVRIGQLF RSKLDGSITS RRFVCSKEGH 240 QHPSRVGCGA FMRIQRQESG RWVVDRHQIE HNHDLDRPTD TNRRLSTSVV FKEEASSGLD 300 NLDFIDSNGD LTIVVRGRES KIGSDWYAVL LEYFQTRQAE DMGFFYAVQM CDGRAMNLFW 360 ADARCRFSCT QFGDAIVFDT TYRRGSHSVP FASFVGVNHH RQPVLLGCAL IADESAESFT 420 WVLQAWLRAM SGRRPVSIIA DQDWAVQHSI AQVFPGTHHR FSAWQIVSKE QENLGALLSL 480 NPEFKYEYET CIFQSQTANE FDAAWNVLIN KYNLKDNAWL KDMSRMRKSW VPLYIRGTFF 540 AGIPVDGSLK SYFCPMVTPQ TPLNEFVLRY EKAIEEGRDE ERKEDFNSLN LPTVLHTKDP 600 IEEQCRRLYT TTMFKVFQKE LMECYSYVGI KINVEGAISR YLVQKCAPNA DERNTVAFNA 660 SNLNISCSCR MFEFEGVLCR HALKVFQIMN VRELPSRYIL HRWTKSAKYG ILRDVDSGGG 720 SQDFRALMLW SLREEANKFI ETGATSLERY KLAFEIMQEG NRTLRWQN

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence

MNREDLGNIM TVRAKPTGSL VLKNNAHHDD EGESRPEPYV GLEFDSAEEA QEFYNLYATK  60
VGFRIRIGQL YRSRVDGSVI SRRFVCFKEG FQTNTRVGCP AFIKVQKADS GKWVIASINK  120
EHNHDLELPG EITPARIQRK SLPAPRTTTV LSARTGLRST DEDGPSGVLD AKRLKREEVG  180
GEPKGEPCKG LEFSSANEAY KFYSSYAANT GFKVRIGQLF RSKLDGSITS RRFVCSKEGH  240
QHPSRVGCGA FMRIQRQESG RWVVDRHQIE HNHDLDRPTD TNRRLSTSVV FKEEASSGLD  300
NLDFIDSNGD LTIVVRGRES KIGSDWYAVL LEYFQTRQAE DMGFFYAVQM CDGRAMNLFW  360
ADARCRFSCT QFGDAIVFDT TYRRGSHSVP FASFVGVNHH RQPVLLGCAL IADESAESFT  420
WVLQAWLRAM SGRRPVSIIA DQDWAVQHSI AQVFPGTHHR FSAWQIVSKE QENLGALLSL  480
NPEFKYEYET CIFQSQTANE FDAAWNVLIN KYNLKDNAWL KDMSRMRKSW VPLYIRGTFF  540
AGIPVDGSLK SYFCPMVTPQ TPLNEFVLRY EKAIEEGRDE ERKEDFNSLN LPTVLHTKDP  600
IEEQCRRLYT TTMFKVFQKE LMECYSYVGI KINVEGAISR YLVQKCAPNA DERNTVAFNA  660
SNLNISCSCR MFEFEGVLCR HALKVFQIMN VRELPSRYIL HRWTKSAKYG ILRDVDSGGG  720
SQDFRALMLW SLREEANKFI ETGATSLERY KLAFEIMQEG NRTLRWQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1 family protein