PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180616.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 237aa MW: 26742.2 Da PI: 9.0935

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180616.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.9	2e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye++s XP_019180616.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	90	4.4e-30	81	172	8	99
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++++++s +qe+ kLk+ +e Lq++qRhllGedL +L +k+L+qLe+q+++slk+iRs++++++++q++el +ke++l e nkaLr kl XP_019180616.1 81 NQTSKDSQSNYQEYLKLKAGVEVLQQSQRHLLGEDLVQLGIKDLEQLENQVDTSLKSIRSTRTKHMIDQLSELHQKEQNLLEVNKALRIKLG 172 3577889*********************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFCSS 60 SSISKTLERY HKCSYGALEA NQTSKDSQSN YQEYLKLKAG VEVLQQSQRH LLGEDLVQLG 120 IKDLEQLENQ VDTSLKSIRS TRTKHMIDQL SELHQKEQNL LEVNKALRIK LGESSNNDAF 180 LTPWEPQGQN MQYGQHSSSQ QCQNTAQIGY NPTSMQANNN VGTSTMNGAG VLPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	3e-90	MIKC_MADS family protein