PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180325.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 338aa MW: 37370.8 Da PI: 5.696

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.7	1.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l+++++q G g+W++ ++ g+ R++k+c++rw +yl XP_019180325.1 14 RGRWTKEEDERLINYIHQNGEGSWRSLPKNAGLQRCGKSCRLRWINYL 61 8*********************************************97 PP
2	Myb_DNA-binding	57.1	4e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+e +v++++ lG++ W++Ia+ ++ gRt++++k++w+++l XP_019180325.1 67 RGNFTADEEETIVKLHTSLGNR-WSLIASQLP-GRTDNEIKNYWNSHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MGRAPCCEKE GLNRGRWTKE EDERLINYIH QNGEGSWRSL PKNAGLQRCG KSCRLRWINY 60 LRSDLKRGNF TADEEETIVK LHTSLGNRWS LIASQLPGRT DNEIKNYWNS HLSRKIYSFR 120 LSINAPMAVQ VAEDAAAARR RRGGRVSRSV AKKYNTASFH VATASFRNKH KPPGSQGSSS 180 AVHNSDGGTA INASEGSGKD GKAFAPKGRA ENDVFSPEPC DNRQLDCQVF DEMTREEDAS 240 GALLAINGGR GRGHPSESGP EPESEGYSDG QTAATTTLGM YTYQLPAPGD SIFDDDDWVN 300 WSLGDDAFQG YDEFWDGLDD MFAWPWDDNT NTNTANGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	2e-69	MYB family protein