PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180288.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 801aa MW: 90906.4 Da PI: 7.3772

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180288.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66	1e-20	104	190	3	91
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn+YA ++GFs+rk k+++ + ++ +++ f+Csk+g+r ++ ++ ++ +tr gC+a+ + +++gkw+vtk ++eHnHel+p XP_019180288.1 104 YNDYAFRMGFSTRKGKQYYVTGTRILKTKVFCCSKSGFRIIPDNP--NKCYSKIVTRSGCNAMCQFDIDSNGKWVVTKHVKEHNHELCP 190 9*****************9999************99988..88999*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence
MNKIVVTNRI EEIDSNSMIV DENSSVFAGK DHIPVAGGCI SPIAFDVPCT NFVDDNEYIP 60 DDFDNSIAVD GTSEHVIVEE SAIPDNEELL GLSVGSIEDA FGKYNDYAFR MGFSTRKGKQ 120 YYVTGTRILK TKVFCCSKSG FRIIPDNPNK CYSKIVTRSG CNAMCQFDID SNGKWVVTKH 180 VKEHNHELCP ASSSYMLRSH RKVSENQLTC LKNMKRSGVP LSDGIRFLKC QSGGSPFVGF 240 TPRDAYNMIY SDSAKHLDGT DSNSLIEIFR RRQMDESDFY FEFELDEDAR LCNFFWRDGQ 300 MKADYDLFGD LVVHDTTYRT NIYDMICAPF VGMNHHCMNV MFGCGFLLNE RIESFVWLFK 360 VFVRSIGGKH PQTIMTDQCA AMATGIAQVF SNSNHRLCIW HIGENSKKHI KSLRNKKGFL 420 ELFNFLLKYT DTEAEFEFYW TRMMTEYGCH KNVWLNKLYS IREKWCPAFS KEYFSGGILS 480 SQRSESTNHS ISRRLSKTAA LCDFYNSFVS VVSEWRSREN GENVRCSQGL APMVMNHVKL 540 LSHARDIYTI EIYYLFEEQF LKGTSCHQES VGGSGNEIKY HVWRPDVDLI RHEVCFKVND 600 LDISCSCMLF SEMGILCSHS LRIFNVHCVA AIPDKYIIKR WTKKGIEDRI ISSDSSLNIL 660 SIASFVWGIQ MGRKFQQLVL SSQANCKARE VCENAFEDAR RKVEGDIGPI VIEDGEEQIA 720 GVIQNPARNR AKGERNRRHI STIEKKYNQV RGRKLGVKIA EMSTKAAVQA SVEGVVANIV 780 GSGYFVHPSS GSHELGLVKS S

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence

MNKIVVTNRI EEIDSNSMIV DENSSVFAGK DHIPVAGGCI SPIAFDVPCT NFVDDNEYIP  60
DDFDNSIAVD GTSEHVIVEE SAIPDNEELL GLSVGSIEDA FGKYNDYAFR MGFSTRKGKQ  120
YYVTGTRILK TKVFCCSKSG FRIIPDNPNK CYSKIVTRSG CNAMCQFDID SNGKWVVTKH  180
VKEHNHELCP ASSSYMLRSH RKVSENQLTC LKNMKRSGVP LSDGIRFLKC QSGGSPFVGF  240
TPRDAYNMIY SDSAKHLDGT DSNSLIEIFR RRQMDESDFY FEFELDEDAR LCNFFWRDGQ  300
MKADYDLFGD LVVHDTTYRT NIYDMICAPF VGMNHHCMNV MFGCGFLLNE RIESFVWLFK  360
VFVRSIGGKH PQTIMTDQCA AMATGIAQVF SNSNHRLCIW HIGENSKKHI KSLRNKKGFL  420
ELFNFLLKYT DTEAEFEFYW TRMMTEYGCH KNVWLNKLYS IREKWCPAFS KEYFSGGILS  480
SQRSESTNHS ISRRLSKTAA LCDFYNSFVS VVSEWRSREN GENVRCSQGL APMVMNHVKL  540
LSHARDIYTI EIYYLFEEQF LKGTSCHQES VGGSGNEIKY HVWRPDVDLI RHEVCFKVND  600
LDISCSCMLF SEMGILCSHS LRIFNVHCVA AIPDKYIIKR WTKKGIEDRI ISSDSSLNIL  660
SIASFVWGIQ MGRKFQQLVL SSQANCKARE VCENAFEDAR RKVEGDIGPI VIEDGEEQIA  720
GVIQNPARNR AKGERNRRHI STIEKKYNQV RGRKLGVKIA EMSTKAAVQA SVEGVVANIV  780
GSGYFVHPSS GSHELGLVKS S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	728	738	RNRAKGERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-88	FAR1 family protein