PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019180118.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 270aa    MW: 29885.3 Da    PI: 5.0859
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019180118.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+ ++++ G g+W++ ++  g+ R++k+c++rw +yl
   XP_019180118.1 14 RGPWTPEEDQILISYIQKNGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding53.84.4e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
   XP_019180118.1  67 RGNFTKEEEDTIIQLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MVRAPCCEKM GLKRGPWTPE EDQILISYIQ KNGHGNWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TKEEEDTIIQ LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKKLKGYQ  120
PPQNAKRHLS GKAAGAGDGG AASSTTSEDD GMNVAVSSPE RSSSTSTSSE MSSVTGGVAA  180
VDAATAGVKQ EDVNSSPEYV PEIDESFWTE EAAAGLPWVQ VDEFPVGASL ANSEDVDRMM  240
WHTRTEDDDM DFWYNVFVRS AGELPELPEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-82MYB family protein