PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180115.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 456aa MW: 51360.5 Da PI: 6.2044

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.5	6.4e-09	10	52	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ + k+++++C ++ +lC+ C ++ H+ H +v XP_019180115.1 10 RACDYCIGKRARWYCAADDAFLCQACDSSVHSAnplarrHARV 52 78*****************************656777777766 PP
2	CCT	67.5	3.6e-23	400	443	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a XP_019180115.1 400 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 443 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MEGKHKAAAR ACDYCIGKRA RWYCAADDAF LCQACDSSVH SANPLARRHA RVQLKTLSNI 60 EPPSWHRGFT RKPRTPRHAH GRYNNNNSKP VVHHDVVKTP LHLSIVPVPE MCSDENYSHD 120 DEKEDQLLLY RVPIFDPVVA DICTTLNITD YDAAAAAFNQ SKCAGGGGHG HHKNWDGKSS 180 TTTMPPTTTE MEMELAEFAA DVESLLGKGL DDEEESSFDM EGLGFLGGNN VEEEKASTMM 240 EFSRRHEKVV VKVEEEDAPA PACEAADDDI FMAANANHHY TSSSSLCFDT LELKFDYDND 300 YYSPNNEKEE EGEELLKMRN KSTILLNLDY EAVILAWSDQ RCPWITGQRP EMNSHHGWPD 360 CIMQRGCGSG TIHAAAYDGV GDMGITFGQA AIADDVWVGR EARVSRYREK RRTRLFSKKI 420 RYEVRKLNAE KRPRMKGRFV KRANFPLLDQ QIGRPA

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MEGKHKAAAR ACDYCIGKRA RWYCAADDAF LCQACDSSVH SANPLARRHA RVQLKTLSNI  60
EPPSWHRGFT RKPRTPRHAH GRYNNNNSKP VVHHDVVKTP LHLSIVPVPE MCSDENYSHD  120
DEKEDQLLLY RVPIFDPVVA DICTTLNITD YDAAAAAFNQ SKCAGGGGHG HHKNWDGKSS  180
TTTMPPTTTE MEMELAEFAA DVESLLGKGL DDEEESSFDM EGLGFLGGNN VEEEKASTMM  240
EFSRRHEKVV VKVEEEDAPA PACEAADDDI FMAANANHHY TSSSSLCFDT LELKFDYDND  300
YYSPNNEKEE EGEELLKMRN KSTILLNLDY EAVILAWSDQ RCPWITGQRP EMNSHHGWPD  360
CIMQRGCGSG TIHAAAYDGV GDMGITFGQA AIADDVWVGR EARVSRYREK RRTRLFSKKI  420
RYEVRKLNAE KRPRMKGRFV KRANFPLLDQ QIGRPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	411	427	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-71	CO-like family protein