PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180061.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 497aa MW: 53428.8 Da PI: 5.0859

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180061.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.7e-11	312	354	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L XP_019180061.1 312 MAERRRRKKLNDRLYLLRSVVPKiS------KMDRASILADAIDYLKEL 354 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MEPIQQRASL DEDDGGGGGG AAAKGFAWNR NDGVGGRIKR EMKAPSYCCE SDSGWYVNSH 60 NGEDPPRSSS LFQGSSSQEN CDFSTPLLQN PMESAGYSGG LHPTESPLSA AAFHPKPPYL 120 SSLLSAVCNY PFDDNLDLLS DSGFSDTPAW NSNDSMGFHG GLGSQMRLVD SDLGFVSPAE 180 ARLLPLADNG GGFSPPPGLD GYGAMVLKPL HNNNSPSPGM GSSNLNLFQK RLAMRQKSGE 240 FQENSQITIG GIGSSLHTSG GDDITGMSGW HSDSDDPSEN VNDGLEISNA NSSVIDGDPK 300 GKKGRPPAKN LMAERRRRKK LNDRLYLLRS VVPKISKMDR ASILADAIDY LKELLQRIKD 360 LNDELQMLAS NGSSVPPVAG LLPSTSAMPT LPFPVKEESW KTSLPSPNNQ PPMVHVELRE 420 ENAFNIHMFC SRRPGLLLST IKALDNLGMD IHQAVISCFN GFALDVFRAE KCNQVMDVHP 480 DEIKAALLDT AAFHGLV

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MEPIQQRASL DEDDGGGGGG AAAKGFAWNR NDGVGGRIKR EMKAPSYCCE SDSGWYVNSH  60
NGEDPPRSSS LFQGSSSQEN CDFSTPLLQN PMESAGYSGG LHPTESPLSA AAFHPKPPYL  120
SSLLSAVCNY PFDDNLDLLS DSGFSDTPAW NSNDSMGFHG GLGSQMRLVD SDLGFVSPAE  180
ARLLPLADNG GGFSPPPGLD GYGAMVLKPL HNNNSPSPGM GSSNLNLFQK RLAMRQKSGE  240
FQENSQITIG GIGSSLHTSG GDDITGMSGW HSDSDDPSEN VNDGLEISNA NSSVIDGDPK  300
GKKGRPPAKN LMAERRRRKK LNDRLYLLRS VVPKISKMDR ASILADAIDY LKELLQRIKD  360
LNDELQMLAS NGSSVPPVAG LLPSTSAMPT LPFPVKEESW KTSLPSPNNQ PPMVHVELRE  420
ENAFNIHMFC SRRPGLLLST IKALDNLGMD IHQAVISCFN GFALDVFRAE KCNQVMDVHP  480
DEIKAALLDT AAFHGLV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	314	321	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	4e-92	bHLH family protein