PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180052.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 332aa MW: 37535.2 Da PI: 6.7486

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180052.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.7	2.7e-18	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl XP_019180052.1 28 RGPWTVEEDFTLINYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 75 89********************************************97 PP
2	Myb_DNA-binding	49.4	1e-15	81	124	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++ XP_019180052.1 81 RGNITLEEQLMILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 124 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MDHVKGGGGG AYKNVVQQQS EDDADLRRGP WTVEEDFTLI NYIAHHGEGR WNSLARCAGL 60 KRTGKSCRLR WLNYLRPDVR RGNITLEEQL MILELHSRWG NRWSKIAQHL PGRTDNEIKN 120 YWRTRVQKHA KQLKCDVNSK QFKDTMRYLW MPRLMERIQA AANAASSTTT STNSDSAAAY 180 PHIHNPSATS DQAAAGVQHP NNAAPAIPDY NAAVNFPSDN SSTAASSDSF ATQVSPVSDL 240 TDCCYNFHQV NQSATHDYYQ PNNNHLIGGY GDSLTSPTAF FNQNLDFQMM ENNNNNNNHQ 300 WIDGGADVVS DNLWNIEDMW FFQQQFNNNS HP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	3e-89	MYB family protein