PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180050.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 362aa MW: 40743.3 Da PI: 7.0204

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	148.2	5.8e-46	114	244	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..kaaksa 94 +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+s tieWLl q+k+aikelt s+++ +sss+s++++ + ++ +++ XP_019180050.1 114 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASSTIEWLLSQSKTAIKELTAAASKNN-----GSSSESDEFEAMStmDEDEEN 203 79************************************************************55555.....223333333333321222222 PP TCP 95 akskksqksaasalnlakesrakarararertrekmriknkl 136 ++ + ++++++ +++kesr+karararert+ekm++k+++ XP_019180050.1 204 -SNTAEAAEDKKVCKKKKESREKARARARERTKEKMMTKTQK 244 .33334444444588999*****************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MRSDQIKTDH IYMFPTTKNP LPFSTETTTL LKRPFPFPWD HQNPSFAQEE PPFFLQFPSP 60 FLDDQVMPLN QIFSPATHAA GETTAAPVSS VNNTSPTTKT KKKTLQGSTP RRRTGKKDRH 120 SKICTAQGVR DRRMRLSLQI ARKFFDLQDM LGFDKASSTI EWLLSQSKTA IKELTAAASK 180 NNGSSSESDE FEAMSTMDED EENSNTAEAA EDKKVCKKKK ESREKARARA RERTKEKMMT 240 KTQKLINPFL DQESIANNSS YTQEHTSSHE GIETHFASSV GITEKYMFHQ YHDDDNQNII 300 SNAASISEGT IDPITSNTFM GFLGNWELAP FSGNPSSSAY LGATNLDFQP VVQQNNFSCN 360 QY

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MRSDQIKTDH IYMFPTTKNP LPFSTETTTL LKRPFPFPWD HQNPSFAQEE PPFFLQFPSP  60
FLDDQVMPLN QIFSPATHAA GETTAAPVSS VNNTSPTTKT KKKTLQGSTP RRRTGKKDRH  120
SKICTAQGVR DRRMRLSLQI ARKFFDLQDM LGFDKASSTI EWLLSQSKTA IKELTAAASK  180
NNGSSSESDE FEAMSTMDED EENSNTAEAA EDKKVCKKKK ESREKARARA RERTKEKMMT  240
KTQKLINPFL DQESIANNSS YTQEHTSSHE GIETHFASSV GITEKYMFHQ YHDDDNQNII  300
SNAASISEGT IDPITSNTFM GFLGNWELAP FSGNPSSSAY LGATNLDFQP VVQQNNFSCN  360
QY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-32	TCP family protein