PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179946.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CPP

Protein Properties

Length: 509aa MW: 55529.9 Da PI: 7.9475

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.8	2.5e-14	97	137	1	42
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 k+kk+CnCk+s+Clk+YCeCfa+g C+ C+C +C+N+ e+ XP_019179946.1 97 KKKKQCNCKHSRCLKLYCECFASGIDCDG-CNCVNCHNNVEN 137 589************************.******9875 PP
2	TCR	51.2	2.5e-16	181	219	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN XP_019179946.1 181 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNF 219 589***********************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MGTTSEGGDF PPKKAEMEVS SSAVDFPAKK LARQLDFTGF GGGGASAAAV LPDQPPLTAK 60 QSQQMPPQQP SMRFLKPESP RARSRQNASE VIDGTPKKKK QCNCKHSRCL KLYCECFASG 120 IDCDGCNCVN CHNNVENEAA KREAVEATLE RNPNAFRPKI ASSPHGVRDK DKARDGLILG 180 KHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCMDCKNFD GSEERRALFH GDHANNVAYL 240 QQAANAAITG AIGASGYGSP PVNKKRKGQE LYFGSMTKNP VHELGQFLQP NHIKSFVPPS 300 KVSSIPSAHV GNAAALGHSK FTYRSLLADV IQPLDLKDLC SVLVYCSREA AKVLADEKEA 360 REKQAQEWKE TSLASSSQEQ FENKKDSVEK PLHDDCSSLD HVEKPSPDDP NLDGSDVSKR 420 RPMSPGTLAL MCDEQETMFV AASPTELSNL GCKTASQSLH GQGVTEVYAE QERVVLTKFR 480 DCLNKLITMG EIKGKLLHEQ LHFLGADKP

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MGTTSEGGDF PPKKAEMEVS SSAVDFPAKK LARQLDFTGF GGGGASAAAV LPDQPPLTAK  60
QSQQMPPQQP SMRFLKPESP RARSRQNASE VIDGTPKKKK QCNCKHSRCL KLYCECFASG  120
IDCDGCNCVN CHNNVENEAA KREAVEATLE RNPNAFRPKI ASSPHGVRDK DKARDGLILG  180
KHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCMDCKNFD GSEERRALFH GDHANNVAYL  240
QQAANAAITG AIGASGYGSP PVNKKRKGQE LYFGSMTKNP VHELGQFLQP NHIKSFVPPS  300
KVSSIPSAHV GNAAALGHSK FTYRSLLADV IQPLDLKDLC SVLVYCSREA AKVLADEKEA  360
REKQAQEWKE TSLASSSQEQ FENKKDSVEK PLHDDCSSLD HVEKPSPDDP NLDGSDVSKR  420
RPMSPGTLAL MCDEQETMFV AASPTELSNL GCKTASQSLH GQGVTEVYAE QERVVLTKFR  480
DCLNKLITMG EIKGKLLHEQ LHFLGADKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-151	CPP family protein