PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179935.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 770aa MW: 88757.7 Da PI: 8.6607

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.6	2.6e-20	48	134	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Yn+YA +vGFsvr+ k+++s+ +++++++ f Csk g+++++ k ++ rtgC a ++ ++++g w v+k e+ HnHel+p XP_019179935.1 48 DMYNDYAFRVGFSVRRGKQRYSSATKTMKTKMFHCSKDGFKRSTGKG----CYSKIDGRTGCGAFVQFDLHENGMWIVSKHEKLHNHELVP 134 58**************************************99887....88999*******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence
MSNSIAQQDV AETEHTTDPV GVVDTEDANP ADQDLVGMSV CSVDEAYDMY NDYAFRVGFS 60 VRRGKQRYSS ATKTMKTKMF HCSKDGFKRS TGKGCYSKID GRTGCGAFVQ FDLHENGMWI 120 VSKHEKLHNH ELVPPSKSYL LRSHRMVSRN HISYLTDLKS SGVSVADGVR FLKTQSGGSP 180 LVGFTSRDAY NSLCTDALNR LDGTDSNTLI EIFKRRQSSE RDFYFDFEVD LESRLCSFFW 240 RDGRMRRDYD LFGDLLVHDT TYRTNKYDMI CGTFVGTNNH CMNVMFGCGF LMNEKIESFV 300 WLFKTFLRSM DYKSPQSIMT DQCAAMAAAI VQVFPSSRHR LCIWHIGENS KKHIKGLRNQ 360 KDFLDIFNCL LKYTDTEAEF EFYWTRMVTT YKCHNNHWIE KLYGCREKWC LAFNKDYFSG 420 GILSSQRSET TNHSISRRLS KTSGLCDFYN SFVGVISEWR SRENGEDVRC SQGVPTMVMD 480 NVKILLHARE IYTIEIYYLF EEQFLKGGSC YQECVMLEDG VYKYHVWRPD VDIIRHEVVF 540 NSRQMDIGCS CKLFTELGIL CCHCLRILNV HCVSEVPEKY ILKRWTKKVV EVDNVDIMSR 600 VDSGNGASSV WLLEIIRKFQ RLAVYSQENI EGRKICKEAI ADAKRRLEAE CGGSLFEDCD 660 IGSTSGVIKD PSTRRMKGLR NRRVSSVTSK KYNKARGRKH LVNMVASKIK SAVHLFSLKL 720 MLSLADCMTV SMYSFFFHMM MFAAYFSLSD VMKAAYSKQK IHVKIRRNKR

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence

MSNSIAQQDV AETEHTTDPV GVVDTEDANP ADQDLVGMSV CSVDEAYDMY NDYAFRVGFS  60
VRRGKQRYSS ATKTMKTKMF HCSKDGFKRS TGKGCYSKID GRTGCGAFVQ FDLHENGMWI  120
VSKHEKLHNH ELVPPSKSYL LRSHRMVSRN HISYLTDLKS SGVSVADGVR FLKTQSGGSP  180
LVGFTSRDAY NSLCTDALNR LDGTDSNTLI EIFKRRQSSE RDFYFDFEVD LESRLCSFFW  240
RDGRMRRDYD LFGDLLVHDT TYRTNKYDMI CGTFVGTNNH CMNVMFGCGF LMNEKIESFV  300
WLFKTFLRSM DYKSPQSIMT DQCAAMAAAI VQVFPSSRHR LCIWHIGENS KKHIKGLRNQ  360
KDFLDIFNCL LKYTDTEAEF EFYWTRMVTT YKCHNNHWIE KLYGCREKWC LAFNKDYFSG  420
GILSSQRSET TNHSISRRLS KTSGLCDFYN SFVGVISEWR SRENGEDVRC SQGVPTMVMD  480
NVKILLHARE IYTIEIYYLF EEQFLKGGSC YQECVMLEDG VYKYHVWRPD VDIIRHEVVF  540
NSRQMDIGCS CKLFTELGIL CCHCLRILNV HCVSEVPEKY ILKRWTKKVV EVDNVDIMSR  600
VDSGNGASSV WLLEIIRKFQ RLAVYSQENI EGRKICKEAI ADAKRRLEAE CGGSLFEDCD  660
IGSTSGVIKD PSTRRMKGLR NRRVSSVTSK KYNKARGRKH LVNMVASKIK SAVHLFSLKL  720
MLSLADCMTV SMYSFFFHMM MFAAYFSLSD VMKAAYSKQK IHVKIRRNKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-84	FAR1 family protein