PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179920.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 731aa MW: 83472.1 Da PI: 9.0607

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179920.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.5	1.9e-17	35	129	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA +GF++r +++++ r g + + Cs+eg++ ++ ++ ++ ++r+r +tr+gC+a++ +++k+g ++++ lel H+H l XP_019179920.1 35 DFYGAYAIIAGFDIRHGTKRRN-RAGAVHLKYILCSREGYKPKKMSSsdkgttASPKKRRRLSTRVGCNARIGFTRRKSGSYKIHALELWHTHCL 128 6***************9999.6777999999***9998888899998889999********************************99 PP FAR1 90 a 90 + XP_019179920.1 129 C 129 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MVVLPDGTKQ WLPKCNSENT PYIGQEFATL ENGVDFYGAY AIIAGFDIRH GTKRRNRAGA 60 VHLKYILCSR EGYKPKKMSS SDKGTTASPK KRRRLSTRVG CNARIGFTRR KSGSYKIHAL 120 ELWHTHCLCS DIGRPFLKIN RKLDIGHKIF VANCARANIG STKSWRLYKE MVGSFSDIGA 180 TSTDFCNFRR DLLAYIAGAD AQMVVEDMYK NKEMEPDFYF DFDLNEDREL CRLFWADTIS 240 RKNFACFGDV MSFDATYSTN RYKLVFVPFT GVDNHKRSIT FGAGLIARED IDSYEWLLKN 300 FKTAMGYTPS CVITDQDPAL KVAIPNIMPE TRHRFCMWHI MEKVGDKVGN ALAKNMDFRK 360 ALNNTVWDET LSATAFELKW AEVMQEYNLV HHRWFDQMYK ARASWIPAYF QDIFMGGLLK 420 TTSRSESENS YFGKFTNHHN SLVEFIMQYN RAIGEQRYKQ KQLNAEGESS FPETKTPLAI 480 ERQAAATYTK NIFYDFQEEI WEGSFTCKIT CKTNVDGGSK YTVHDTGEQI FEVTHEESTK 540 RTQCNCNKFN RVGLLCKHVL AVFKNEGVEE IPGCYIVPRW TKNACAQPMY NVVWKASSTT 600 QGGNELRTIA NQLWNEFYNC MGLANGCPNE MDIMLSTMQE LKGRLQSARQ QTKASTTPQS 660 VIESILNTTA PAEIQIKPPS VAKNKGSGKR LKSNKEKATE KHKKKVRTCA TCDRPGHDSR 720 NCPERKPLPD E

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MVVLPDGTKQ WLPKCNSENT PYIGQEFATL ENGVDFYGAY AIIAGFDIRH GTKRRNRAGA  60
VHLKYILCSR EGYKPKKMSS SDKGTTASPK KRRRLSTRVG CNARIGFTRR KSGSYKIHAL  120
ELWHTHCLCS DIGRPFLKIN RKLDIGHKIF VANCARANIG STKSWRLYKE MVGSFSDIGA  180
TSTDFCNFRR DLLAYIAGAD AQMVVEDMYK NKEMEPDFYF DFDLNEDREL CRLFWADTIS  240
RKNFACFGDV MSFDATYSTN RYKLVFVPFT GVDNHKRSIT FGAGLIARED IDSYEWLLKN  300
FKTAMGYTPS CVITDQDPAL KVAIPNIMPE TRHRFCMWHI MEKVGDKVGN ALAKNMDFRK  360
ALNNTVWDET LSATAFELKW AEVMQEYNLV HHRWFDQMYK ARASWIPAYF QDIFMGGLLK  420
TTSRSESENS YFGKFTNHHN SLVEFIMQYN RAIGEQRYKQ KQLNAEGESS FPETKTPLAI  480
ERQAAATYTK NIFYDFQEEI WEGSFTCKIT CKTNVDGGSK YTVHDTGEQI FEVTHEESTK  540
RTQCNCNKFN RVGLLCKHVL AVFKNEGVEE IPGCYIVPRW TKNACAQPMY NVVWKASSTT  600
QGGNELRTIA NQLWNEFYNC MGLANGCPNE MDIMLSTMQE LKGRLQSARQ QTKASTTPQS  660
VIESILNTTA PAEIQIKPPS VAKNKGSGKR LKSNKEKATE KHKKKVRTCA TCDRPGHDSR  720
NCPERKPLPD E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	95	PKKRRRL
2	91	95	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-90	FAR1 family protein