PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179883.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 425aa MW: 46933.7 Da PI: 6.7948

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179883.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.1e-09	264	311	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_019179883.1 264 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 311 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MEKDSMFLSD ESTMPYELHN CFFNPNWENP MDQRDLLGSS LSSMVSSPTN NGENGNFVLR 60 ELIGRLGEIS PSYADNTSCY NTPLSSPPKL SNISMVDHQI RATLPFPQFS TDPGFAERAA 120 KFSCFANGAG VMSPGLKDPE LQHRMVHNLE TGKLSRVPSN QSIKASGSQM AEKSELGDSR 180 ENSSVSEQIP GGETANSRKR KAAPKEKGKE TTNVVSENKE SSAKRNKPEE DANKKQNSKD 240 NPKPPEAPKD YIHVRARRGQ ATDAHSLAER VRREKISERM KLLQDLVPGC NKVTGKAVML 300 DEIINYVQSL QRQVEFLSMK LATVNPAMDS NMGALLSKDI VLQSRGSVHH NMFPTDASYG 360 QNFMSPITSL NRNLGIAALP PPMGNFVENP SQVSTFFEND LNNVVQMCIG QNQAENVHGE 420 MQELK

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MEKDSMFLSD ESTMPYELHN CFFNPNWENP MDQRDLLGSS LSSMVSSPTN NGENGNFVLR  60
ELIGRLGEIS PSYADNTSCY NTPLSSPPKL SNISMVDHQI RATLPFPQFS TDPGFAERAA  120
KFSCFANGAG VMSPGLKDPE LQHRMVHNLE TGKLSRVPSN QSIKASGSQM AEKSELGDSR  180
ENSSVSEQIP GGETANSRKR KAAPKEKGKE TTNVVSENKE SSAKRNKPEE DANKKQNSKD  240
NPKPPEAPKD YIHVRARRGQ ATDAHSLAER VRREKISERM KLLQDLVPGC NKVTGKAVML  300
DEIINYVQSL QRQVEFLSMK LATVNPAMDS NMGALLSKDI VLQSRGSVHH NMFPTDASYG  360
QNFMSPITSL NRNLGIAALP PPMGNFVENP SQVSTFFEND LNNVVQMCIG QNQAENVHGE  420
MQELK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	8e-84	bHLH family protein