PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179706.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 749aa MW: 85129.4 Da PI: 8.664

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.7	8e-18	61	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA+ +GF+vr ++k+ r++e+++r +vC++eg + +k ++k+rr+r ++r++C+a++ +k ++g++e+t +++ H XP_019179706.1 61 DFYTNYARVCGFDVRLYTMKRA-RDRETVMRYLVCNREGIKGGGISKpicahgdsggKRKQRRRRISNRVKCRARICFRKVSSGEFEITVFVEGH 154 6***************9998.77779999*******999999****9999******************************* PP FAR1 86 nHela 90 +H+++ XP_019179706.1 155 SHHMC 159 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence
MSDTGSPELS GAHASEGDSD YVSHGVRELL AEQTTYWFLA VDSEITPVVG RRFSTLDEGI 60 DFYTNYARVC GFDVRLYTMK RARDRETVMR YLVCNREGIK GGGISKPICA HGDSGGKRKQ 120 RRRRISNRVK CRARICFRKV SSGEFEITVF VEGHSHHMCS DASKLFMRVN RKLDVAHQAF 180 AANCVRANAG SSKGFKLYRE ITGLYANVGA TDTEFHNFKR DLQVYVDGKD GEMIIEKFKT 240 KCAICENFFF DYDMDKENRV ARLFWADPIG RRNFSLFGDT VSFDATYGTN RYNLVFVPFT 300 EVDHHKRCIT FAAGLLTKED VESYTWLLQR FRTAMSSVSS CVITDQDPAM KIAIAQVLPN 360 CRHRFCMWHI ITKVNEKIGS DLVKDVQFCN KLNGIVWNET ISVGEFEVQW HLLMEKYNLT 420 THRWFTKLYT EREFWIPAYF TDLPMSGLLR TTSRSEAENN VYGNCSRPHF SLVEFYMQYE 480 SVLETQRYKQ SKLNAESEGY LPDFKTPLAL ERYLAQMFTI KIFYELQQEI EAGCFYCRVV 540 GIREEGEVIT YDIRGEGTAT YTVQYTPVGN HASCSCKLFE RLGLVCRHMF LVFRDAQIKS 600 LPLDYVLPRW CKQVGGVVCC RQCSDVPSTE SGPNRIWNAM HTCAALVGNN TDRKSRLVQV 660 LEDLKREFMS AGPNVAPAKG NNAAIVALCG VAPPASITIK PPAQAKNKGT GKRIKSQREL 720 AVLSSAKIGR KCGVCGEYAR HNARSCPYK

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence

MSDTGSPELS GAHASEGDSD YVSHGVRELL AEQTTYWFLA VDSEITPVVG RRFSTLDEGI  60
DFYTNYARVC GFDVRLYTMK RARDRETVMR YLVCNREGIK GGGISKPICA HGDSGGKRKQ  120
RRRRISNRVK CRARICFRKV SSGEFEITVF VEGHSHHMCS DASKLFMRVN RKLDVAHQAF  180
AANCVRANAG SSKGFKLYRE ITGLYANVGA TDTEFHNFKR DLQVYVDGKD GEMIIEKFKT  240
KCAICENFFF DYDMDKENRV ARLFWADPIG RRNFSLFGDT VSFDATYGTN RYNLVFVPFT  300
EVDHHKRCIT FAAGLLTKED VESYTWLLQR FRTAMSSVSS CVITDQDPAM KIAIAQVLPN  360
CRHRFCMWHI ITKVNEKIGS DLVKDVQFCN KLNGIVWNET ISVGEFEVQW HLLMEKYNLT  420
THRWFTKLYT EREFWIPAYF TDLPMSGLLR TTSRSEAENN VYGNCSRPHF SLVEFYMQYE  480
SVLETQRYKQ SKLNAESEGY LPDFKTPLAL ERYLAQMFTI KIFYELQQEI EAGCFYCRVV  540
GIREEGEVIT YDIRGEGTAT YTVQYTPVGN HASCSCKLFE RLGLVCRHMF LVFRDAQIKS  600
LPLDYVLPRW CKQVGGVVCC RQCSDVPSTE SGPNRIWNAM HTCAALVGNN TDRKSRLVQV  660
LEDLKREFMS AGPNVAPAKG NNAAIVALCG VAPPASITIK PPAQAKNKGT GKRIKSQREL  720
AVLSSAKIGR KCGVCGEYAR HNARSCPYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-83	FAR1 family protein