PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179705.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 799aa MW: 90094.8 Da PI: 7.6072

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.6	7.6e-17	173	269	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY++YA vGF+ r+ + +++ r+g +++r+ Cs+eg++++ ++ +r+r+ +r+gCkak++ k++++g ++v+ le+ H+H XP_019179705.1 173 FYKRYAGYVGFDCRQGTIRRR-RDGVVVERQVFCSREGFKKSIYSTqstcvgdgkPIVVKRRRVINRVGCKAKVVFKRKSNGLFVVHFLEERHTH 266 9*************98886.9999***********9888888999988756667899****************************** PP FAR1 88 ela 90 ++ XP_019179705.1 267 VMC 269 998 PP

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence
MWNNETFGLD LNIADVACTS IDVVVEGSGG VCNTGHSNDD GLDRSGGVCD EGYHAINLDP 60 VGFICDKDTS IDAGVEGSGG VCNTEHSTDG DHIDGCVEGS GGQCDEGNST DIAVETSGQG 120 ASEHCLTDVE AEDNAFVLEM SPGLTKYWRL VCSDSLKPVV GQTFDSLDCA IVFYKRYAGY 180 VGFDCRQGTI RRRRDGVVVE RQVFCSREGF KKSIYSTQST CVGDGKPIVV KRRRVINRVG 240 CKAKVVFKRK SNGLFVVHFL EERHTHVMCS IIAKKFLKEN RSLDAGHQMF IASCVRANIG 300 YVRSYKLFKE IVGEYSNVGA TRVDFKNFKR DLMAYILNGD AQLFIDTLFK RRELCEAFEF 360 EYDVDDVDQL TRVFWADAVS RKNFALFGDA VLFDATYRSN RYKLVFVLFT GINNHKRSIT 420 FGAGLLTRED VDSYVWLLER FKKTMRHEPI CVVTDQDPAV KIAVARVFGT SKHRFCMWHI 480 MCKVGEKVGP VLAKDEVFRR KLNGIVWNKS IDSKAFEDSW SRIIEEYGLV DNGWFRYLFK 540 SRTFWASPYF HDEFMSGFVR TTSRSESQNS FFGSFSNGHS SLTPLALEKH AMDVYTISVF 600 YDVQVEICEG CFSCRVVSLC ECDGKVCYGI KDGDKKAWCV EFLLADCTAI CSCKMFERMG 660 LVCRHIFFVF KDRGLERIPS MYLVSRWTKA ACLKPIFYID DTVVDQSAKV DNVRVITNLM 720 WSEIYACVGL ADGNVERLEQ LRRGSTMEVR DPIKVKNKGG GKRMKSAREK AVNKCVKQSR 780 KCHTCDEYGH NSRTCPLNG

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence

MWNNETFGLD LNIADVACTS IDVVVEGSGG VCNTGHSNDD GLDRSGGVCD EGYHAINLDP  60
VGFICDKDTS IDAGVEGSGG VCNTEHSTDG DHIDGCVEGS GGQCDEGNST DIAVETSGQG  120
ASEHCLTDVE AEDNAFVLEM SPGLTKYWRL VCSDSLKPVV GQTFDSLDCA IVFYKRYAGY  180
VGFDCRQGTI RRRRDGVVVE RQVFCSREGF KKSIYSTQST CVGDGKPIVV KRRRVINRVG  240
CKAKVVFKRK SNGLFVVHFL EERHTHVMCS IIAKKFLKEN RSLDAGHQMF IASCVRANIG  300
YVRSYKLFKE IVGEYSNVGA TRVDFKNFKR DLMAYILNGD AQLFIDTLFK RRELCEAFEF  360
EYDVDDVDQL TRVFWADAVS RKNFALFGDA VLFDATYRSN RYKLVFVLFT GINNHKRSIT  420
FGAGLLTRED VDSYVWLLER FKKTMRHEPI CVVTDQDPAV KIAVARVFGT SKHRFCMWHI  480
MCKVGEKVGP VLAKDEVFRR KLNGIVWNKS IDSKAFEDSW SRIIEEYGLV DNGWFRYLFK  540
SRTFWASPYF HDEFMSGFVR TTSRSESQNS FFGSFSNGHS SLTPLALEKH AMDVYTISVF  600
YDVQVEICEG CFSCRVVSLC ECDGKVCYGI KDGDKKAWCV EFLLADCTAI CSCKMFERMG  660
LVCRHIFFVF KDRGLERIPS MYLVSRWTKA ACLKPIFYID DTVVDQSAKV DNVRVITNLM  720
WSEIYACVGL ADGNVERLEQ LRRGSTMEVR DPIKVKNKGG GKRMKSAREK AVNKCVKQSR  780
KCHTCDEYGH NSRTCPLNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	235	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-71	FAR1 family protein